Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
491 | 3' | -55.8 | AC_000013.1 | + | 28443 | 1.15 | 0.000305 |
Target: 5'- aGGGGGGCAUCUCGAAAACGCCGCUCCg -3' miRNA: 3'- -CCCCCCGUAGAGCUUUUGCGGCGAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 9452 | 0.77 | 0.143712 |
Target: 5'- aGGGGGGCG-CUCGAccgugcuCGCgCGUUCCu -3' miRNA: 3'- -CCCCCCGUaGAGCUuuu----GCG-GCGAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 28039 | 0.73 | 0.27968 |
Target: 5'- aGGGGGuGCGUCUUuac--CGuCCGCUCCc -3' miRNA: 3'- -CCCCC-CGUAGAGcuuuuGC-GGCGAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 9011 | 0.72 | 0.324733 |
Target: 5'- aGGGGGGCGcCUCGuguggaccaacGAAGCGCUGUa-- -3' miRNA: 3'- -CCCCCCGUaGAGC-----------UUUUGCGGCGagg -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 12686 | 0.71 | 0.374966 |
Target: 5'- cGGGGaggucgugGGCGUCgggaaggaCGggGACGCCGCg-- -3' miRNA: 3'- -CCCC--------CCGUAGa-------GCuuUUGCGGCGagg -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 12149 | 0.7 | 0.401981 |
Target: 5'- cGGGGacGCGUCUguugcggaggaCGAugGCGCCGC-CCg -3' miRNA: 3'- cCCCC--CGUAGA-----------GCUuuUGCGGCGaGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 18171 | 0.69 | 0.458554 |
Target: 5'- cGGGGcgggaacGGCGUCUgcUGGAccGAcCGCCGCUUCu -3' miRNA: 3'- -CCCC-------CCGUAGA--GCUU--UU-GCGGCGAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 13443 | 0.69 | 0.478678 |
Target: 5'- uGGGaGGGCggacgcgGUUUCGcgucGGCGCCGCUUg -3' miRNA: 3'- -CCC-CCCG-------UAGAGCuu--UUGCGGCGAGg -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 44266 | 0.68 | 0.510694 |
Target: 5'- cGGGuaaguGGGUcgUgaugaCGGAGGCGCCGgUCCg -3' miRNA: 3'- -CCC-----CCCGuaGa----GCUUUUGCGGCgAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 37796 | 0.68 | 0.521214 |
Target: 5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3' miRNA: 3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 37763 | 0.68 | 0.521214 |
Target: 5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3' miRNA: 3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 37730 | 0.68 | 0.521214 |
Target: 5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3' miRNA: 3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 37697 | 0.68 | 0.521214 |
Target: 5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3' miRNA: 3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 37829 | 0.68 | 0.521214 |
Target: 5'- aGGGGGGUGUCcauagGggGugGUCGC-CUg -3' miRNA: 3'- -CCCCCCGUAGag---CuuUugCGGCGaGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 11952 | 0.68 | 0.528627 |
Target: 5'- cGGGGGGCAuuucuuccuccucuUCUCuGGGAAgGCUuCUUCu -3' miRNA: 3'- -CCCCCCGU--------------AGAG-CUUUUgCGGcGAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 30411 | 0.68 | 0.542496 |
Target: 5'- aGGGGGguUUagGGAGGgguuucCGCCGCUUCc -3' miRNA: 3'- cCCCCCguAGagCUUUU------GCGGCGAGG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 17989 | 0.67 | 0.564057 |
Target: 5'- -uGGGGCAUg-CGu---CGCCGCUCg -3' miRNA: 3'- ccCCCCGUAgaGCuuuuGCGGCGAGg -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 1794 | 0.67 | 0.564057 |
Target: 5'- uGGGGGauguUCUUGggGAUGCUuuGCgggCCa -3' miRNA: 3'- cCCCCCgu--AGAGCuuUUGCGG--CGa--GG- -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 8695 | 0.66 | 0.628693 |
Target: 5'- aGGcGGGGCAUCUaCGAAGgcacucaaaucguGCGUCacgugacauuGCUCa -3' miRNA: 3'- -CC-CCCCGUAGA-GCUUU-------------UGCGG----------CGAGg -5' |
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491 | 3' | -55.8 | AC_000013.1 | + | 18511 | 0.66 | 0.651823 |
Target: 5'- --cGGGCcacccgUCGAAcGCGCCGCUCa -3' miRNA: 3'- cccCCCGuag---AGCUUuUGCGGCGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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