miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
492 3' -49.6 AC_000013.1 + 28502 0.66 0.94712
Target:  5'- uUCGA-GAUGCCccccUCGACGGAGGu -3'
miRNA:   3'- -GGCUgCUACGGcauuAGCUGCUUCUc -5'
492 3' -49.6 AC_000013.1 + 24566 0.66 0.942164
Target:  5'- cCCGACGAUGCCauu-UgGACcAGGAu -3'
miRNA:   3'- -GGCUGCUACGGcauuAgCUGcUUCUc -5'
492 3' -49.6 AC_000013.1 + 15317 0.66 0.942164
Target:  5'- gCCGgauACGgcGCCGcucgAAUUGAgCGAAGAGc -3'
miRNA:   3'- -GGC---UGCuaCGGCa---UUAGCU-GCUUCUC- -5'
492 3' -49.6 AC_000013.1 + 9282 0.67 0.931372
Target:  5'- -gGACGGUGCggggCGUAuauuUCGGCGAcguacucgggGGAGg -3'
miRNA:   3'- ggCUGCUACG----GCAUu---AGCUGCU----------UCUC- -5'
492 3' -49.6 AC_000013.1 + 29449 0.67 0.931372
Target:  5'- -aGGCGGUuucCCGggGGUUGGCGAAGGGu -3'
miRNA:   3'- ggCUGCUAc--GGCa-UUAGCUGCUUCUC- -5'
492 3' -49.6 AC_000013.1 + 12265 0.67 0.925533
Target:  5'- gCCGGCGGUGgCGgg---GACGGAGGc -3'
miRNA:   3'- -GGCUGCUACgGCauuagCUGCUUCUc -5'
492 3' -49.6 AC_000013.1 + 16411 0.67 0.912968
Target:  5'- -gGAgGAgcgGCCGgcAUCGACGucgcgaAGGAGg -3'
miRNA:   3'- ggCUgCUa--CGGCauUAGCUGC------UUCUC- -5'
492 3' -49.6 AC_000013.1 + 7045 0.68 0.876488
Target:  5'- gCGACGGUaGuuGUccGUCGACGAGGu- -3'
miRNA:   3'- gGCUGCUA-CggCAu-UAGCUGCUUCuc -5'
492 3' -49.6 AC_000013.1 + 7496 0.69 0.833299
Target:  5'- gCGGCGGcgGCCGcacgGAUCGcucccgaggacgACGGAGAGg -3'
miRNA:   3'- gGCUGCUa-CGGCa---UUAGC------------UGCUUCUC- -5'
492 3' -49.6 AC_000013.1 + 23303 0.7 0.784475
Target:  5'- gCCGACGA--CCGU-AUCGAUGAuGGGa -3'
miRNA:   3'- -GGCUGCUacGGCAuUAGCUGCUuCUC- -5'
492 3' -49.6 AC_000013.1 + 31542 0.71 0.763677
Target:  5'- aCUGaACGGUGUuaggCGUGAUCGugGggGuGg -3'
miRNA:   3'- -GGC-UGCUACG----GCAUUAGCugCuuCuC- -5'
492 3' -49.6 AC_000013.1 + 18787 0.71 0.742301
Target:  5'- cCCGuuucaGGUGCCGgGAUCGcguguucaACGAGGAGa -3'
miRNA:   3'- -GGCug---CUACGGCaUUAGC--------UGCUUCUC- -5'
492 3' -49.6 AC_000013.1 + 4572 0.72 0.69822
Target:  5'- -gGACGggGCUcu-GUCGACGAAGGGc -3'
miRNA:   3'- ggCUGCuaCGGcauUAGCUGCUUCUC- -5'
492 3' -49.6 AC_000013.1 + 11248 0.73 0.607522
Target:  5'- -aGGCGcGUGCCGag--CGACGAGGAGu -3'
miRNA:   3'- ggCUGC-UACGGCauuaGCUGCUUCUC- -5'
492 3' -49.6 AC_000013.1 + 28785 1.11 0.003139
Target:  5'- uCCGACGAUGCCGUAAUCGACGAAGAGc -3'
miRNA:   3'- -GGCUGCUACGGCAUUAGCUGCUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.