miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
494 3' -51.6 AC_000013.1 + 39791 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 40195 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 40060 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 39925 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 40465 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 39656 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 39521 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 39386 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 39251 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 39116 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 38981 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 38847 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 40330 0.66 0.860963
Target:  5'- -cGGAgCUCccccUGGCgg-CCGAGGgCCGCc -3'
miRNA:   3'- gaCCU-GAG----ACCGaaaGGUUUCaGGCG- -5'
494 3' -51.6 AC_000013.1 + 22888 0.66 0.852269
Target:  5'- --cGACUaguugauucagCUGGCUUUCCGuGGUCC-Cg -3'
miRNA:   3'- gacCUGA-----------GACCGAAAGGUuUCAGGcG- -5'
494 3' -51.6 AC_000013.1 + 29491 0.74 0.393119
Target:  5'- -cGGACUUUGGaaagCCAGAGUCCa- -3'
miRNA:   3'- gaCCUGAGACCgaaaGGUUUCAGGcg -5'
494 3' -51.6 AC_000013.1 + 29422 1.14 0.000829
Target:  5'- aCUGGACUCUGGCUUUCCAAAGUCCGCg -3'
miRNA:   3'- -GACCUGAGACCGAAAGGUUUCAGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.