miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
495 3' -45 AC_000013.1 + 2863 0.66 0.995339
Target:  5'- aGCAuCGGucACACGgAAAAUGCGUUc -3'
miRNA:   3'- cUGUcGCUuuUGUGCgUUUUACGUAG- -5'
495 3' -45 AC_000013.1 + 32407 0.66 0.991861
Target:  5'- cGGCGGCGGGAACAUcuugugccuguucaGCAccaucaGCAUCu -3'
miRNA:   3'- -CUGUCGCUUUUGUG--------------CGUuuua--CGUAG- -5'
495 3' -45 AC_000013.1 + 27757 0.67 0.990909
Target:  5'- cGAUGGCGAGGACuuCGUu--GUGCAg- -3'
miRNA:   3'- -CUGUCGCUUUUGu-GCGuuuUACGUag -5'
495 3' -45 AC_000013.1 + 38254 0.67 0.990909
Target:  5'- aGAUGGCGcucaAGAGCAUGCGGGugcGCAUUg -3'
miRNA:   3'- -CUGUCGC----UUUUGUGCGUUUua-CGUAG- -5'
495 3' -45 AC_000013.1 + 13993 0.67 0.9894
Target:  5'- cGAUAGCGGAGGauaagaACGCGugguUGCGUg -3'
miRNA:   3'- -CUGUCGCUUUUg-----UGCGUuuu-ACGUAg -5'
495 3' -45 AC_000013.1 + 11025 0.67 0.987702
Target:  5'- uACGGC--AGGCACGCGcAGGUGCcgCg -3'
miRNA:   3'- cUGUCGcuUUUGUGCGU-UUUACGuaG- -5'
495 3' -45 AC_000013.1 + 17267 0.67 0.985802
Target:  5'- aGAC-GUGGAAucCGCGCAGAugaccgGCGUCg -3'
miRNA:   3'- -CUGuCGCUUUu-GUGCGUUUua----CGUAG- -5'
495 3' -45 AC_000013.1 + 996 0.69 0.969371
Target:  5'- cGGCAGCccccGAGguAGCACGCuggg-GCGUCa -3'
miRNA:   3'- -CUGUCG----CUU--UUGUGCGuuuuaCGUAG- -5'
495 3' -45 AC_000013.1 + 12695 0.69 0.965676
Target:  5'- --aGGCGAuucuguccauAAGCACgGCGuuGUGCAUCu -3'
miRNA:   3'- cugUCGCU----------UUUGUG-CGUuuUACGUAG- -5'
495 3' -45 AC_000013.1 + 13502 0.69 0.957369
Target:  5'- uGGCGGCGGGAGCggACGUAgacgagauucGAAUGCGa- -3'
miRNA:   3'- -CUGUCGCUUUUG--UGCGU----------UUUACGUag -5'
495 3' -45 AC_000013.1 + 25345 0.69 0.957369
Target:  5'- uGAUGGCGGAGGCA-GCAGAccGCgAUCu -3'
miRNA:   3'- -CUGUCGCUUUUGUgCGUUUuaCG-UAG- -5'
495 3' -45 AC_000013.1 + 33918 0.7 0.947784
Target:  5'- -uCAGCGAGcGCAUGCGcacAUGCAUa -3'
miRNA:   3'- cuGUCGCUUuUGUGCGUuu-UACGUAg -5'
495 3' -45 AC_000013.1 + 18657 0.7 0.942497
Target:  5'- cGGCAGCGGAGGC-CGUAGuggGCGa- -3'
miRNA:   3'- -CUGUCGCUUUUGuGCGUUuuaCGUag -5'
495 3' -45 AC_000013.1 + 4772 0.7 0.93091
Target:  5'- uGAUGGUGAGGGCGCaCAGAGccGCGUCg -3'
miRNA:   3'- -CUGUCGCUUUUGUGcGUUUUa-CGUAG- -5'
495 3' -45 AC_000013.1 + 8699 0.71 0.917962
Target:  5'- cGACAGgcggggcaucuaCGAAGGCACuCAAAucGUGCGUCa -3'
miRNA:   3'- -CUGUC------------GCUUUUGUGcGUUU--UACGUAG- -5'
495 3' -45 AC_000013.1 + 8705 0.71 0.903657
Target:  5'- --uGGCGAAGGCGcCGUAGAggGCGUUg -3'
miRNA:   3'- cugUCGCUUUUGU-GCGUUUuaCGUAG- -5'
495 3' -45 AC_000013.1 + 3559 0.71 0.900635
Target:  5'- gGACAGCGugcacucucuCACGCuAGAAUGCAa- -3'
miRNA:   3'- -CUGUCGCuuuu------GUGCG-UUUUACGUag -5'
495 3' -45 AC_000013.1 + 30193 1.12 0.005171
Target:  5'- gGACAGCGAAAACACGCAAAAUGCAUCa -3'
miRNA:   3'- -CUGUCGCUUUUGUGCGUUUUACGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.