miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
496 3' -44.8 AC_000013.1 + 3696 0.66 0.997112
Target:  5'- aUGACGCCGUcgaugauuucgaugGGAGGUcugccgugacaucGGAAGCaGugCg -3'
miRNA:   3'- -AUUGUGGCA--------------UCUCCA-------------UUUUUGaCugG- -5'
496 3' -44.8 AC_000013.1 + 18191 0.66 0.996105
Target:  5'- -uACGCgaGUAGuGGUAGAAGCggGGCg -3'
miRNA:   3'- auUGUGg-CAUCuCCAUUUUUGa-CUGg -5'
496 3' -44.8 AC_000013.1 + 9822 0.67 0.992289
Target:  5'- uUGACGgccUCGUAGGGGc----ACUGGCCu -3'
miRNA:   3'- -AUUGU---GGCAUCUCCauuuuUGACUGG- -5'
496 3' -44.8 AC_000013.1 + 21994 0.68 0.988518
Target:  5'- gAGCACCGauuuGAGGUGucucaGAGGCUuugacacguguaaaaGACCa -3'
miRNA:   3'- aUUGUGGCau--CUCCAU-----UUUUGA---------------CUGG- -5'
496 3' -44.8 AC_000013.1 + 13266 0.68 0.985967
Target:  5'- gGGCGCCGgcGGGG-AAGGACcacACCg -3'
miRNA:   3'- aUUGUGGCauCUCCaUUUUUGac-UGG- -5'
496 3' -44.8 AC_000013.1 + 13045 0.68 0.983228
Target:  5'- aGACGCUGUuGGGGUGuaccagcgccggcuGAuucCUGACCa -3'
miRNA:   3'- aUUGUGGCAuCUCCAU--------------UUuu-GACUGG- -5'
496 3' -44.8 AC_000013.1 + 8711 0.74 0.831581
Target:  5'- aGGCGCCGUAGAGGgcGuugcuuagcauuuucGAGaugGACCg -3'
miRNA:   3'- aUUGUGGCAUCUCCauU---------------UUUga-CUGG- -5'
496 3' -44.8 AC_000013.1 + 31526 0.77 0.670501
Target:  5'- cGugAUCGUGGGGGUGGAAACccgUGACa -3'
miRNA:   3'- aUugUGGCAUCUCCAUUUUUG---ACUGg -5'
496 3' -44.8 AC_000013.1 + 28890 0.78 0.622257
Target:  5'- cGGCGCCGUuuacGAGGUAGAGGCggugGAaCCg -3'
miRNA:   3'- aUUGUGGCAu---CUCCAUUUUUGa---CU-GG- -5'
496 3' -44.8 AC_000013.1 + 30921 1.01 0.03254
Target:  5'- gUAACACCGUAGAGGUAAA-ACUGACCc -3'
miRNA:   3'- -AUUGUGGCAUCUCCAUUUuUGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.