Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
498 | 3' | -63.6 | AC_000013.1 | + | 37585 | 1.07 | 0.000161 |
Target: 5'- gCCCACCCCCCUUGGCACCCCCCUGUAc -3' miRNA: 3'- -GGGUGGGGGGAACCGUGGGGGGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 37630 | 0.89 | 0.004334 |
Target: 5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3' miRNA: 3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 37663 | 0.89 | 0.004334 |
Target: 5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3' miRNA: 3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 37696 | 0.89 | 0.004334 |
Target: 5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3' miRNA: 3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 37729 | 0.89 | 0.004334 |
Target: 5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3' miRNA: 3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 37762 | 0.89 | 0.004334 |
Target: 5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3' miRNA: 3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 9202 | 0.7 | 0.144713 |
Target: 5'- cCCCAUgCCCCacGGCAUgCCCUUGg- -3' miRNA: 3'- -GGGUGgGGGGaaCCGUGgGGGGACau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 37982 | 0.67 | 0.219799 |
Target: 5'- -gCGgUCCCCUagcuucaaUGGCGCCCCCUcGUGg -3' miRNA: 3'- ggGUgGGGGGA--------ACCGUGGGGGGaCAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 33840 | 0.66 | 0.24317 |
Target: 5'- aUCCGCagCCCCUgguaagGGCuACCaCCuCCUGUAg -3' miRNA: 3'- -GGGUGg-GGGGAa-----CCG-UGG-GG-GGACAU- -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 40409 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 40274 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 40139 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 40004 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 39870 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 39735 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 39600 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 39465 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 39330 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 39060 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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498 | 3' | -63.6 | AC_000013.1 | + | 38925 | 0.66 | 0.282057 |
Target: 5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3' miRNA: 3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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