miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
498 5' -56.9 AC_000013.1 + 38793 0.66 0.517592
Target:  5'- gGUGCAguGGCGGCCaacgGCCgCCaggGGGCg -3'
miRNA:   3'- aCAUGU--CCGCUGG----UGGgGGauaCCUG- -5'
498 5' -56.9 AC_000013.1 + 16376 0.67 0.486122
Target:  5'- cUGUGuCGGGCGugC-CCCCUgcgAUGG-Cu -3'
miRNA:   3'- -ACAU-GUCCGCugGuGGGGGa--UACCuG- -5'
498 5' -56.9 AC_000013.1 + 33853 0.67 0.465653
Target:  5'- gGUAaGGGCuACCACCUCCUGUagaauuacaaGGAUg -3'
miRNA:   3'- aCAUgUCCGcUGGUGGGGGAUA----------CCUG- -5'
498 5' -56.9 AC_000013.1 + 3315 0.67 0.465653
Target:  5'- uUGUACAGaCGACagCGCgCCCUGcauuUGGGCa -3'
miRNA:   3'- -ACAUGUCcGCUG--GUGgGGGAU----ACCUG- -5'
498 5' -56.9 AC_000013.1 + 20389 0.68 0.416552
Target:  5'- -uUACGGGguuaaUGACCACCCCCUAccGAa -3'
miRNA:   3'- acAUGUCC-----GCUGGUGGGGGAUacCUg -5'
498 5' -56.9 AC_000013.1 + 1044 0.69 0.397815
Target:  5'- gUGUACGGGCG-CauaGCCCCUcGUucGGGCu -3'
miRNA:   3'- -ACAUGUCCGCuGg--UGGGGGaUA--CCUG- -5'
498 5' -56.9 AC_000013.1 + 37751 1.1 0.000417
Target:  5'- cUGUACAGGCGACCACCCCCUAUGGACa -3'
miRNA:   3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5'
498 5' -56.9 AC_000013.1 + 37718 1.1 0.000417
Target:  5'- cUGUACAGGCGACCACCCCCUAUGGACa -3'
miRNA:   3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5'
498 5' -56.9 AC_000013.1 + 37685 1.1 0.000417
Target:  5'- cUGUACAGGCGACCACCCCCUAUGGACa -3'
miRNA:   3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5'
498 5' -56.9 AC_000013.1 + 37652 1.1 0.000417
Target:  5'- cUGUACAGGCGACCACCCCCUAUGGACa -3'
miRNA:   3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5'
498 5' -56.9 AC_000013.1 + 37619 1.1 0.000417
Target:  5'- cUGUACAGGCGACCACCCCCUAUGGACa -3'
miRNA:   3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.