Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
498 | 5' | -56.9 | AC_000013.1 | + | 38793 | 0.66 | 0.517592 |
Target: 5'- gGUGCAguGGCGGCCaacgGCCgCCaggGGGCg -3' miRNA: 3'- aCAUGU--CCGCUGG----UGGgGGauaCCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 16376 | 0.67 | 0.486122 |
Target: 5'- cUGUGuCGGGCGugC-CCCCUgcgAUGG-Cu -3' miRNA: 3'- -ACAU-GUCCGCugGuGGGGGa--UACCuG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 33853 | 0.67 | 0.465653 |
Target: 5'- gGUAaGGGCuACCACCUCCUGUagaauuacaaGGAUg -3' miRNA: 3'- aCAUgUCCGcUGGUGGGGGAUA----------CCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 3315 | 0.67 | 0.465653 |
Target: 5'- uUGUACAGaCGACagCGCgCCCUGcauuUGGGCa -3' miRNA: 3'- -ACAUGUCcGCUG--GUGgGGGAU----ACCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 20389 | 0.68 | 0.416552 |
Target: 5'- -uUACGGGguuaaUGACCACCCCCUAccGAa -3' miRNA: 3'- acAUGUCC-----GCUGGUGGGGGAUacCUg -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 1044 | 0.69 | 0.397815 |
Target: 5'- gUGUACGGGCG-CauaGCCCCUcGUucGGGCu -3' miRNA: 3'- -ACAUGUCCGCuGg--UGGGGGaUA--CCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 37751 | 1.1 | 0.000417 |
Target: 5'- cUGUACAGGCGACCACCCCCUAUGGACa -3' miRNA: 3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 37718 | 1.1 | 0.000417 |
Target: 5'- cUGUACAGGCGACCACCCCCUAUGGACa -3' miRNA: 3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 37685 | 1.1 | 0.000417 |
Target: 5'- cUGUACAGGCGACCACCCCCUAUGGACa -3' miRNA: 3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 37652 | 1.1 | 0.000417 |
Target: 5'- cUGUACAGGCGACCACCCCCUAUGGACa -3' miRNA: 3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5' |
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498 | 5' | -56.9 | AC_000013.1 | + | 37619 | 1.1 | 0.000417 |
Target: 5'- cUGUACAGGCGACCACCCCCUAUGGACa -3' miRNA: 3'- -ACAUGUCCGCUGGUGGGGGAUACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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