Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
499 | 5' | -55.6 | AC_000013.1 | + | 37890 | 1.15 | 0.000281 |
Target: 5'- cGCAAUGGAGCUCAUCCACGAGGGGGCg -3' miRNA: 3'- -CGUUACCUCGAGUAGGUGCUCCCCCG- -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 38791 | 0.75 | 0.202929 |
Target: 5'- uGCAGUGGcGGC-CAacggCCGCcAGGGGGCg -3' miRNA: 3'- -CGUUACC-UCGaGUa---GGUGcUCCCCCG- -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 19205 | 0.72 | 0.308067 |
Target: 5'- ----cGGAGaCUCuagCCuGCGAGGGGGUg -3' miRNA: 3'- cguuaCCUC-GAGua-GG-UGCUCCCCCG- -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 8312 | 0.71 | 0.357038 |
Target: 5'- cGUAAUGGGcGUggUCAUCCuCGgcuauauaAGGGGGCg -3' miRNA: 3'- -CGUUACCU-CG--AGUAGGuGC--------UCCCCCG- -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39465 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39330 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39195 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39061 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 38926 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39600 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39735 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 39870 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 40005 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 40139 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 40274 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 40409 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 40544 | 0.7 | 0.420735 |
Target: 5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3' miRNA: 3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 37900 | 0.67 | 0.554919 |
Target: 5'- --cAUGGAGCgggagaCACuAGGGGGCa -3' miRNA: 3'- cguUACCUCGaguag-GUGcUCCCCCG- -5' |
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499 | 5' | -55.6 | AC_000013.1 | + | 16458 | 0.67 | 0.576863 |
Target: 5'- aGCGuugaGGAGC-CAU-CGC-AGGGGGCa -3' miRNA: 3'- -CGUua--CCUCGaGUAgGUGcUCCCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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