miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
500 5' -56.1 AC_000013.1 + 40229 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39960 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39825 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39690 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39555 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39420 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39285 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39150 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 39016 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 28584 0.69 0.38187
Target:  5'- --cGCaGCUggguCAGaCACCGGGUGGCu -3'
miRNA:   3'- uaaCG-CGGauu-GUCgGUGGUCCACCG- -5'
500 5' -56.1 AC_000013.1 + 18783 0.78 0.089862
Target:  5'- -gUGCGCCgcuuugAGCAGCgGCCAGGgcGGCc -3'
miRNA:   3'- uaACGCGGa-----UUGUCGgUGGUCCa-CCG- -5'
500 5' -56.1 AC_000013.1 + 38785 0.79 0.079882
Target:  5'- --gGCgGCC-AACGGCCGCCAGGgGGCg -3'
miRNA:   3'- uaaCG-CGGaUUGUCGGUGGUCCaCCG- -5'
500 5' -56.1 AC_000013.1 + 38282 1.1 0.000393
Target:  5'- cAUUGCGCCUAACAGCCACCAGGUGGCg -3'
miRNA:   3'- -UAACGCGGAUUGUCGGUGGUCCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.