miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
501 3' -57.6 AC_000013.1 + 23751 0.66 0.489895
Target:  5'- cGAGAGGUGG-GACCaUCCGuGCccgAGGGa -3'
miRNA:   3'- -UUCUUCACCuCUGGgAGGU-CG---UCCCc -5'
501 3' -57.6 AC_000013.1 + 38930 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39065 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39199 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39334 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39469 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39604 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39739 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 39874 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 40009 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 40143 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 40278 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 40413 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 40548 0.67 0.469377
Target:  5'- cGGGugcAGUGGcGGCCCUcggCCGcCAGGGGg -3'
miRNA:   3'- uUCU---UCACCuCUGGGA---GGUcGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 33917 0.67 0.42972
Target:  5'- cAGGAGGUGGuaGCCCUUac-CAGGGGc -3'
miRNA:   3'- -UUCUUCACCucUGGGAGgucGUCCCC- -5'
501 3' -57.6 AC_000013.1 + 3451 0.68 0.401305
Target:  5'- -cGAGGUGagcGGGugCUUCCAGCuGGGc -3'
miRNA:   3'- uuCUUCAC---CUCugGGAGGUCGuCCCc -5'
501 3' -57.6 AC_000013.1 + 38349 1.09 0.000426
Target:  5'- aAAGAAGUGGAGACCCUCCAGCAGGGGg -3'
miRNA:   3'- -UUCUUCACCUCUGGGAGGUCGUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.