miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
502 5' -58.3 AC_000013.1 + 5058 0.66 0.57182
Target:  5'- cUCACCGAucucaGugGGAccAGauGCCCGCCUa -3'
miRNA:   3'- -GGUGGCUuc---CugCCU--UCc-UGGGCGGG- -5'
502 5' -58.3 AC_000013.1 + 5742 0.66 0.57182
Target:  5'- gUCugCGcAGGugG--AGGAgUCGCCCa -3'
miRNA:   3'- -GGugGCuUCCugCcuUCCUgGGCGGG- -5'
502 5' -58.3 AC_000013.1 + 3969 0.66 0.550732
Target:  5'- uUAaaGGAGGACuGGAAcGGCCuCGCCUg -3'
miRNA:   3'- gGUggCUUCCUG-CCUUcCUGG-GCGGG- -5'
502 5' -58.3 AC_000013.1 + 7262 0.66 0.529889
Target:  5'- ---aCGAAGGAgCGGc-GGACCUaGCCCc -3'
miRNA:   3'- ggugGCUUCCU-GCCuuCCUGGG-CGGG- -5'
502 5' -58.3 AC_000013.1 + 8935 0.66 0.529889
Target:  5'- -aACCG-AGGAUGGgcGGuCaCgGCCCu -3'
miRNA:   3'- ggUGGCuUCCUGCCuuCCuG-GgCGGG- -5'
502 5' -58.3 AC_000013.1 + 23741 0.66 0.529889
Target:  5'- gCgACCGGAGcGAgaGGuGGGACCauccgUGCCCg -3'
miRNA:   3'- -GgUGGCUUC-CUg-CCuUCCUGG-----GCGGG- -5'
502 5' -58.3 AC_000013.1 + 25593 0.66 0.525754
Target:  5'- gCACCGcguGGuCGGAuucgcgucuagguGGugCCGCCUc -3'
miRNA:   3'- gGUGGCuu-CCuGCCUu------------CCugGGCGGG- -5'
502 5' -58.3 AC_000013.1 + 30312 0.66 0.523691
Target:  5'- gCACuuCGggGGGCGGAggAGGAggaagcggcggaaacCCCuCCCu -3'
miRNA:   3'- gGUG--GCuuCCUGCCU--UCCU---------------GGGcGGG- -5'
502 5' -58.3 AC_000013.1 + 967 0.66 0.519575
Target:  5'- -aGCuCGgcGGACGuGguGGugCCGCCg -3'
miRNA:   3'- ggUG-GCuuCCUGC-CuuCCugGGCGGg -5'
502 5' -58.3 AC_000013.1 + 12003 0.67 0.499193
Target:  5'- -gGCCGggGG-CGGAAcGACgCGUCUc -3'
miRNA:   3'- ggUGGCuuCCuGCCUUcCUGgGCGGG- -5'
502 5' -58.3 AC_000013.1 + 13555 0.67 0.489136
Target:  5'- cCCGCCGccAGcccgcaaACGGGAGGACCUagGUCCu -3'
miRNA:   3'- -GGUGGCu-UCc------UGCCUUCCUGGG--CGGG- -5'
502 5' -58.3 AC_000013.1 + 25068 0.68 0.440375
Target:  5'- gCCAUCGAGGGA-GGcugcAGGAgCCCGUaCCu -3'
miRNA:   3'- -GGUGGCUUCCUgCCu---UCCU-GGGCG-GG- -5'
502 5' -58.3 AC_000013.1 + 12267 0.68 0.420733
Target:  5'- gCGCCGGcgguggcgGGGACGGAGGcGAUCCcuucucgggcggcGCCa -3'
miRNA:   3'- gGUGGCU--------UCCUGCCUUC-CUGGG-------------CGGg -5'
502 5' -58.3 AC_000013.1 + 15954 0.68 0.403426
Target:  5'- gCCAUCGAuuGAuCGGAGGGACUgGCg- -3'
miRNA:   3'- -GGUGGCUucCU-GCCUUCCUGGgCGgg -5'
502 5' -58.3 AC_000013.1 + 20811 0.68 0.402527
Target:  5'- --uCCG-AGGGCGGAGGGAUuaacaagCUGUCCg -3'
miRNA:   3'- gguGGCuUCCUGCCUUCCUG-------GGCGGG- -5'
502 5' -58.3 AC_000013.1 + 13684 0.69 0.391846
Target:  5'- aCCGCCGAcGacuucgcguacgauGAgGGAcAGGACCCGUCg -3'
miRNA:   3'- -GGUGGCUuC--------------CUgCCU-UCCUGGGCGGg -5'
502 5' -58.3 AC_000013.1 + 13517 0.69 0.377034
Target:  5'- gCCGCCGucGGACGcGAAG---CCGUCCg -3'
miRNA:   3'- -GGUGGCuuCCUGC-CUUCcugGGCGGG- -5'
502 5' -58.3 AC_000013.1 + 12162 0.69 0.377034
Target:  5'- gUugCGGAGGACGau-GG-CgCCGCCCg -3'
miRNA:   3'- gGugGCUUCCUGCcuuCCuG-GGCGGG- -5'
502 5' -58.3 AC_000013.1 + 16161 0.71 0.297782
Target:  5'- gCCGCCGAcgcgAGGcguucuguaagcGCGcGcAGGACCCuGCCCc -3'
miRNA:   3'- -GGUGGCU----UCC------------UGC-CuUCCUGGG-CGGG- -5'
502 5' -58.3 AC_000013.1 + 18232 0.73 0.22622
Target:  5'- -aAUUGAAGGAggaGGAggacgAGGACCCGCCg -3'
miRNA:   3'- ggUGGCUUCCUg--CCU-----UCCUGGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.