Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 154203 | 1.13 | 0.002803 |
Target: 5'- gGGAGAGUUCACUCGGCACGCAUGCACg -3' miRNA: 3'- -CCUCUCAAGUGAGCCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 10615 | 0.77 | 0.440212 |
Target: 5'- cGAGcGGUUC-CggGGCGCGCAUGCACg -3' miRNA: 3'- cCUC-UCAAGuGagCCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 20471 | 0.74 | 0.630071 |
Target: 5'- cGAGcAGagCGC-CGGUGCGCGUGCGCg -3' miRNA: 3'- cCUC-UCaaGUGaGCCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 37174 | 0.71 | 0.762544 |
Target: 5'- uGGcGGGc-CGCUCGGCGCGCcagGCGCc -3' miRNA: 3'- -CCuCUCaaGUGAGCCGUGCGua-CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 129277 | 0.71 | 0.772164 |
Target: 5'- uGGuGAcGUUC-CUCGGCAgGCAccGCGCg -3' miRNA: 3'- -CCuCU-CAAGuGAGCCGUgCGUa-CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 9119 | 0.71 | 0.781654 |
Target: 5'- gGGGGAGccgcCGCgagguggucugCGGCACGCggGCGCg -3' miRNA: 3'- -CCUCUCaa--GUGa----------GCCGUGCGuaCGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 71116 | 0.71 | 0.800207 |
Target: 5'- cGGGGA---CGCUgaUGGCGCGCGUGCGg -3' miRNA: 3'- -CCUCUcaaGUGA--GCCGUGCGUACGUg -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 59659 | 0.71 | 0.809251 |
Target: 5'- cGGAGAGggggggCgACUCGGCuCGCGUgggggcggcggGCACg -3' miRNA: 3'- -CCUCUCaa----G-UGAGCCGuGCGUA-----------CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 86145 | 0.7 | 0.826831 |
Target: 5'- uGGGaAGcgCACcgcggGGCGCGCAUGCGCg -3' miRNA: 3'- -CCUcUCaaGUGag---CCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 153767 | 0.7 | 0.826831 |
Target: 5'- cGGaAGGGggCGCUgCGGCccGCGCuccuUGCGCg -3' miRNA: 3'- -CC-UCUCaaGUGA-GCCG--UGCGu---ACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 127511 | 0.7 | 0.849384 |
Target: 5'- cGGAGGGcauccggcgccaccUUCGCaaucccaagauUCGGCGCGCGUuCACg -3' miRNA: 3'- -CCUCUC--------------AAGUG-----------AGCCGUGCGUAcGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 66862 | 0.7 | 0.851801 |
Target: 5'- cGGGGAG-UCGC-CGGgGCGCcgGgGCu -3' miRNA: 3'- -CCUCUCaAGUGaGCCgUGCGuaCgUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 26260 | 0.69 | 0.85972 |
Target: 5'- aGGAcGAGgcgCACUCGcacCGCGCcUGCGCg -3' miRNA: 3'- -CCU-CUCaa-GUGAGCc--GUGCGuACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 126727 | 0.69 | 0.874911 |
Target: 5'- gGGGGAGUgCGCUCuuCGCGCGgccGCACc -3' miRNA: 3'- -CCUCUCAaGUGAGccGUGCGUa--CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 149247 | 0.69 | 0.874911 |
Target: 5'- cGGGGGcgUCGC-CGGCcgGCGCggGCGCg -3' miRNA: 3'- cCUCUCa-AGUGaGCCG--UGCGuaCGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 154040 | 0.69 | 0.882172 |
Target: 5'- uGGGAGcgCGC-CGGgGCGCG-GCACg -3' miRNA: 3'- cCUCUCaaGUGaGCCgUGCGUaCGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 36484 | 0.69 | 0.885012 |
Target: 5'- gGGAGGGggCGC-CGGCGCgacgcgggcggccggGCGgggGCGCg -3' miRNA: 3'- -CCUCUCaaGUGaGCCGUG---------------CGUa--CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 1655 | 0.68 | 0.895996 |
Target: 5'- -cGGGGU--ACa-GGCGCGCGUGCGCg -3' miRNA: 3'- ccUCUCAagUGagCCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 35133 | 0.68 | 0.925232 |
Target: 5'- gGGAGAGgagaag-GGCGCGCcgGUGCGCg -3' miRNA: 3'- -CCUCUCaagugagCCGUGCG--UACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 85976 | 0.68 | 0.926327 |
Target: 5'- cGGGGAGUUCgaggccgccGC-CGGgGCGCugGCGCa -3' miRNA: 3'- -CCUCUCAAG---------UGaGCCgUGCGuaCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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