Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 66862 | 0.7 | 0.851801 |
Target: 5'- cGGGGAG-UCGC-CGGgGCGCcgGgGCu -3' miRNA: 3'- -CCUCUCaAGUGaGCCgUGCGuaCgUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 127511 | 0.7 | 0.849384 |
Target: 5'- cGGAGGGcauccggcgccaccUUCGCaaucccaagauUCGGCGCGCGUuCACg -3' miRNA: 3'- -CCUCUC--------------AAGUG-----------AGCCGUGCGUAcGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 153767 | 0.7 | 0.826831 |
Target: 5'- cGGaAGGGggCGCUgCGGCccGCGCuccuUGCGCg -3' miRNA: 3'- -CC-UCUCaaGUGA-GCCG--UGCGu---ACGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 86145 | 0.7 | 0.826831 |
Target: 5'- uGGGaAGcgCACcgcggGGCGCGCAUGCGCg -3' miRNA: 3'- -CCUcUCaaGUGag---CCGUGCGUACGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 59659 | 0.71 | 0.809251 |
Target: 5'- cGGAGAGggggggCgACUCGGCuCGCGUgggggcggcggGCACg -3' miRNA: 3'- -CCUCUCaa----G-UGAGCCGuGCGUA-----------CGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 71116 | 0.71 | 0.800207 |
Target: 5'- cGGGGA---CGCUgaUGGCGCGCGUGCGg -3' miRNA: 3'- -CCUCUcaaGUGA--GCCGUGCGUACGUg -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 9119 | 0.71 | 0.781654 |
Target: 5'- gGGGGAGccgcCGCgagguggucugCGGCACGCggGCGCg -3' miRNA: 3'- -CCUCUCaa--GUGa----------GCCGUGCGuaCGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 129277 | 0.71 | 0.772164 |
Target: 5'- uGGuGAcGUUC-CUCGGCAgGCAccGCGCg -3' miRNA: 3'- -CCuCU-CAAGuGAGCCGUgCGUa-CGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 37174 | 0.71 | 0.762544 |
Target: 5'- uGGcGGGc-CGCUCGGCGCGCcagGCGCc -3' miRNA: 3'- -CCuCUCaaGUGAGCCGUGCGua-CGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 20471 | 0.74 | 0.630071 |
Target: 5'- cGAGcAGagCGC-CGGUGCGCGUGCGCg -3' miRNA: 3'- cCUC-UCaaGUGaGCCGUGCGUACGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 10615 | 0.77 | 0.440212 |
Target: 5'- cGAGcGGUUC-CggGGCGCGCAUGCACg -3' miRNA: 3'- cCUC-UCAAGuGagCCGUGCGUACGUG- -5' |
|||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 154203 | 1.13 | 0.002803 |
Target: 5'- gGGAGAGUUCACUCGGCACGCAUGCACg -3' miRNA: 3'- -CCUCUCAAGUGAGCCGUGCGUACGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home