miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5102 3' -53.5 NC_001798.1 + 66862 0.7 0.851801
Target:  5'- cGGGGAG-UCGC-CGGgGCGCcgGgGCu -3'
miRNA:   3'- -CCUCUCaAGUGaGCCgUGCGuaCgUG- -5'
5102 3' -53.5 NC_001798.1 + 127511 0.7 0.849384
Target:  5'- cGGAGGGcauccggcgccaccUUCGCaaucccaagauUCGGCGCGCGUuCACg -3'
miRNA:   3'- -CCUCUC--------------AAGUG-----------AGCCGUGCGUAcGUG- -5'
5102 3' -53.5 NC_001798.1 + 153767 0.7 0.826831
Target:  5'- cGGaAGGGggCGCUgCGGCccGCGCuccuUGCGCg -3'
miRNA:   3'- -CC-UCUCaaGUGA-GCCG--UGCGu---ACGUG- -5'
5102 3' -53.5 NC_001798.1 + 86145 0.7 0.826831
Target:  5'- uGGGaAGcgCACcgcggGGCGCGCAUGCGCg -3'
miRNA:   3'- -CCUcUCaaGUGag---CCGUGCGUACGUG- -5'
5102 3' -53.5 NC_001798.1 + 59659 0.71 0.809251
Target:  5'- cGGAGAGggggggCgACUCGGCuCGCGUgggggcggcggGCACg -3'
miRNA:   3'- -CCUCUCaa----G-UGAGCCGuGCGUA-----------CGUG- -5'
5102 3' -53.5 NC_001798.1 + 71116 0.71 0.800207
Target:  5'- cGGGGA---CGCUgaUGGCGCGCGUGCGg -3'
miRNA:   3'- -CCUCUcaaGUGA--GCCGUGCGUACGUg -5'
5102 3' -53.5 NC_001798.1 + 9119 0.71 0.781654
Target:  5'- gGGGGAGccgcCGCgagguggucugCGGCACGCggGCGCg -3'
miRNA:   3'- -CCUCUCaa--GUGa----------GCCGUGCGuaCGUG- -5'
5102 3' -53.5 NC_001798.1 + 129277 0.71 0.772164
Target:  5'- uGGuGAcGUUC-CUCGGCAgGCAccGCGCg -3'
miRNA:   3'- -CCuCU-CAAGuGAGCCGUgCGUa-CGUG- -5'
5102 3' -53.5 NC_001798.1 + 37174 0.71 0.762544
Target:  5'- uGGcGGGc-CGCUCGGCGCGCcagGCGCc -3'
miRNA:   3'- -CCuCUCaaGUGAGCCGUGCGua-CGUG- -5'
5102 3' -53.5 NC_001798.1 + 20471 0.74 0.630071
Target:  5'- cGAGcAGagCGC-CGGUGCGCGUGCGCg -3'
miRNA:   3'- cCUC-UCaaGUGaGCCGUGCGUACGUG- -5'
5102 3' -53.5 NC_001798.1 + 10615 0.77 0.440212
Target:  5'- cGAGcGGUUC-CggGGCGCGCAUGCACg -3'
miRNA:   3'- cCUC-UCAAGuGagCCGUGCGUACGUG- -5'
5102 3' -53.5 NC_001798.1 + 154203 1.13 0.002803
Target:  5'- gGGAGAGUUCACUCGGCACGCAUGCACg -3'
miRNA:   3'- -CCUCUCAAGUGAGCCGUGCGUACGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.