Results 61 - 75 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 30150 | 0.66 | 0.849148 |
Target: 5'- aGCggGCGGGGGGccggGGugAGGGA-GGGAc -3' miRNA: 3'- gUGa-CGUCUCCC----UCugUCUCUgCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 39435 | 0.66 | 0.849148 |
Target: 5'- cCGCgUGCGGGGGGgucagGGACAGcgccaucagcGGAgGGGGg -3' miRNA: 3'- -GUG-ACGUCUCCC-----UCUGUC----------UCUgCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 150533 | 0.66 | 0.849148 |
Target: 5'- cCugUGCGGAGgaggaGGAGACAaagGAGAgcggccCGGGGc -3' miRNA: 3'- -GugACGUCUC-----CCUCUGU---CUCU------GCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 31864 | 0.66 | 0.854632 |
Target: 5'- aCGCcGCGGAGGGGGcgGCggcccgcccccggaAGAGGCGcGGGu -3' miRNA: 3'- -GUGaCGUCUCCCUC--UG--------------UCUCUGC-CCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 35116 | 0.66 | 0.856952 |
Target: 5'- -----gAGGGGGAGGUAGGGAgGGGAg -3' miRNA: 3'- gugacgUCUCCCUCUGUCUCUgCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 12706 | 0.66 | 0.856952 |
Target: 5'- -gUUGCuGGGGGcGGCGGGGGCGuGGu -3' miRNA: 3'- guGACGuCUCCCuCUGUCUCUGC-CCu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 153502 | 0.66 | 0.864555 |
Target: 5'- aCAcCUGCGGgcGGGGAGACAcGGGGgucggaGGGGc -3' miRNA: 3'- -GU-GACGUC--UCCCUCUGU-CUCUg-----CCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 33796 | 0.66 | 0.864555 |
Target: 5'- gGCUGC--GGGGAGACucccaucGGGGCGaGGGg -3' miRNA: 3'- gUGACGucUCCCUCUGu------CUCUGC-CCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 76647 | 0.66 | 0.87195 |
Target: 5'- gCGCUGCGGcAGGcGAGGgccaUGGAGGCGGc- -3' miRNA: 3'- -GUGACGUC-UCC-CUCU----GUCUCUGCCcu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 27408 | 0.66 | 0.879133 |
Target: 5'- gACUgGCGucuucGGGGGGGCGGGGAgcuUGGGAg -3' miRNA: 3'- gUGA-CGUc----UCCCUCUGUCUCU---GCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 15456 | 0.66 | 0.879133 |
Target: 5'- ---gGCGGGGGGucgcguggguAGACGuGGGCGGGGg -3' miRNA: 3'- gugaCGUCUCCC----------UCUGUcUCUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 27547 | 0.66 | 0.879133 |
Target: 5'- gCGC-GCGGGGGGAGggGCGGcGcccGCGGGGg -3' miRNA: 3'- -GUGaCGUCUCCCUC--UGUCuC---UGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 149949 | 0.66 | 0.886097 |
Target: 5'- gACcGCGGccuGGGAcGACGGAgacgccGACGGGGg -3' miRNA: 3'- gUGaCGUCu--CCCU-CUGUCU------CUGCCCU- -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 146071 | 0.66 | 0.886097 |
Target: 5'- aCACgggGgGGAGGGguccgGGGC-GAGGCGGGc -3' miRNA: 3'- -GUGa--CgUCUCCC-----UCUGuCUCUGCCCu -5' |
|||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 9666 | 0.66 | 0.886097 |
Target: 5'- gCGC-GCGGAGGGc-GCGG-GAUGGGGg -3' miRNA: 3'- -GUGaCGUCUCCCucUGUCuCUGCCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home