miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 150987 1.09 0.000293
Target:  5'- gUGCCCGACCCCCGCCCGACCCCCGCCc -3'
miRNA:   3'- -ACGGGCUGGGGGCGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151021 1.08 0.000316
Target:  5'- cGCCCGACCCCCGCCCGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151054 1.08 0.000316
Target:  5'- cGCCCGACCCCCGCCCGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151087 1.02 0.001012
Target:  5'- cGCCCGACCCCCGCCCGcCCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGGCuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 742 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 832 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 682 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 802 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 772 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 712 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 862 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 892 0.91 0.006923
Target:  5'- cGCCCGACCCCCGCCCGcccgACCCCCGa- -3'
miRNA:   3'- aCGGGCUGGGGGCGGGC----UGGGGGCgg -5'
5104 5' -68.6 NC_001798.1 + 145523 0.88 0.010365
Target:  5'- cGCCCGgccgccgcgcGCCCCCGCCCGGCCgCCCGCg -3'
miRNA:   3'- aCGGGC----------UGGGGGCGGGCUGG-GGGCGg -5'
5104 5' -68.6 NC_001798.1 + 145418 0.88 0.010901
Target:  5'- cGCCCGgccgccgcgcGCCCCCGCCCGgccgccgcgcGCCCCCGCCc -3'
miRNA:   3'- aCGGGC----------UGGGGGCGGGC----------UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145468 0.86 0.014745
Target:  5'- cGCCgCGcGCCCCCGCCCGgccgccgcgcGCCCCCGCCc -3'
miRNA:   3'- aCGG-GC-UGGGGGCGGGC----------UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23614 0.86 0.01512
Target:  5'- aGCCCG-CCCCgGCCCgGACCCCCGCg -3'
miRNA:   3'- aCGGGCuGGGGgCGGG-CUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 30425 0.85 0.018955
Target:  5'- gGCCaCGcCCCCgGCCCGGCCCCCgGCCg -3'
miRNA:   3'- aCGG-GCuGGGGgCGGGCUGGGGG-CGG- -5'
5104 5' -68.6 NC_001798.1 + 145723 0.84 0.01993
Target:  5'- aGcCCCGGCCCCgGCCCG-CgCCCCGCCg -3'
miRNA:   3'- aC-GGGCUGGGGgCGGGCuG-GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 147304 0.84 0.022032
Target:  5'- cGCCCcGCUCCCggGCCCGACCCUCGCCc -3'
miRNA:   3'- aCGGGcUGGGGG--CGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21454 0.84 0.023164
Target:  5'- gGCCCGuccccccguCCCCCGCCCGuCCCCCcgGCCg -3'
miRNA:   3'- aCGGGCu--------GGGGGCGGGCuGGGGG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.