miRNA display CGI


Results 1 - 20 of 474 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 110 0.69 0.23937
Target:  5'- cGCCCccuUCCCCGUCCcuCCCCCggaGCCg -3'
miRNA:   3'- aCGGGcu-GGGGGCGGGcuGGGGG---CGG- -5'
5104 5' -68.6 NC_001798.1 + 139 0.66 0.410617
Target:  5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3'
miRNA:   3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 207 0.72 0.151977
Target:  5'- cGCgCGGCuuuuuuCCCgCGCCCG-CCCCCGCg -3'
miRNA:   3'- aCGgGCUG------GGG-GCGGGCuGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 349 0.68 0.303397
Target:  5'- uUGCaCCaagcACCcgCCCGCCCGcacacgguUCCCCGCCa -3'
miRNA:   3'- -ACG-GGc---UGG--GGGCGGGCu-------GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 468 0.71 0.191339
Target:  5'- cGCCU--CCCCCGCggCCGccuCCCCCGCg -3'
miRNA:   3'- aCGGGcuGGGGGCG--GGCu--GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 499 0.76 0.090093
Target:  5'- cGCCCcgggggcuuCCCCCGCCCcucCCCCCGCg -3'
miRNA:   3'- aCGGGcu-------GGGGGCGGGcu-GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 531 0.67 0.329745
Target:  5'- cGCCCGcgGCCCCgaGCUCGcagcaGCCCCUcCCu -3'
miRNA:   3'- aCGGGC--UGGGGg-CGGGC-----UGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 682 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 712 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 742 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 772 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 802 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 832 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 862 1 0.001443
Target:  5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 892 0.91 0.006923
Target:  5'- cGCCCGACCCCCGCCCGcccgACCCCCGa- -3'
miRNA:   3'- aCGGGCUGGGGGCGGGC----UGGGGGCgg -5'
5104 5' -68.6 NC_001798.1 + 1016 0.67 0.349171
Target:  5'- cGCCCGAuuccuuCCCCCucuccccaucucCCCccuCCCCCGCUc -3'
miRNA:   3'- aCGGGCU------GGGGGc-----------GGGcu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 1207 0.73 0.138397
Target:  5'- aGCaCCG-UCCCCGCgCGGCCCgCgGCCg -3'
miRNA:   3'- aCG-GGCuGGGGGCGgGCUGGG-GgCGG- -5'
5104 5' -68.6 NC_001798.1 + 1320 0.77 0.072408
Target:  5'- cGCCCGcgcgcagaACUCCCGCCgCGGCCCgcgcagcuCCGCCg -3'
miRNA:   3'- aCGGGC--------UGGGGGCGG-GCUGGG--------GGCGG- -5'
5104 5' -68.6 NC_001798.1 + 1499 0.67 0.329066
Target:  5'- cGCCCGcGCCCgaggcggCgGCCCGGCCguCCagCGCCg -3'
miRNA:   3'- aCGGGC-UGGG-------GgCGGGCUGG--GG--GCGG- -5'
5104 5' -68.6 NC_001798.1 + 1677 0.68 0.284113
Target:  5'- gGCCUccacgcgcgcgaaGACCCCCgGCCCGAacaCgCgGCCg -3'
miRNA:   3'- aCGGG-------------CUGGGGG-CGGGCUg--GgGgCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.