Results 1 - 20 of 474 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 110 | 0.69 | 0.23937 |
Target: 5'- cGCCCccuUCCCCGUCCcuCCCCCggaGCCg -3' miRNA: 3'- aCGGGcu-GGGGGCGGGcuGGGGG---CGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 139 | 0.66 | 0.410617 |
Target: 5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3' miRNA: 3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 207 | 0.72 | 0.151977 |
Target: 5'- cGCgCGGCuuuuuuCCCgCGCCCG-CCCCCGCg -3' miRNA: 3'- aCGgGCUG------GGG-GCGGGCuGGGGGCGg -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 349 | 0.68 | 0.303397 |
Target: 5'- uUGCaCCaagcACCcgCCCGCCCGcacacgguUCCCCGCCa -3' miRNA: 3'- -ACG-GGc---UGG--GGGCGGGCu-------GGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 468 | 0.71 | 0.191339 |
Target: 5'- cGCCU--CCCCCGCggCCGccuCCCCCGCg -3' miRNA: 3'- aCGGGcuGGGGGCG--GGCu--GGGGGCGg -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 499 | 0.76 | 0.090093 |
Target: 5'- cGCCCcgggggcuuCCCCCGCCCcucCCCCCGCg -3' miRNA: 3'- aCGGGcu-------GGGGGCGGGcu-GGGGGCGg -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 531 | 0.67 | 0.329745 |
Target: 5'- cGCCCGcgGCCCCgaGCUCGcagcaGCCCCUcCCu -3' miRNA: 3'- aCGGGC--UGGGGg-CGGGC-----UGGGGGcGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 682 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 712 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 742 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 772 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 802 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 832 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 862 | 1 | 0.001443 |
Target: 5'- cGCCCGACCCCCGCCCgcccGACCCCCGCCc -3' miRNA: 3'- aCGGGCUGGGGGCGGG----CUGGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 892 | 0.91 | 0.006923 |
Target: 5'- cGCCCGACCCCCGCCCGcccgACCCCCGa- -3' miRNA: 3'- aCGGGCUGGGGGCGGGC----UGGGGGCgg -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 1016 | 0.67 | 0.349171 |
Target: 5'- cGCCCGAuuccuuCCCCCucuccccaucucCCCccuCCCCCGCUc -3' miRNA: 3'- aCGGGCU------GGGGGc-----------GGGcu-GGGGGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 1207 | 0.73 | 0.138397 |
Target: 5'- aGCaCCG-UCCCCGCgCGGCCCgCgGCCg -3' miRNA: 3'- aCG-GGCuGGGGGCGgGCUGGG-GgCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 1320 | 0.77 | 0.072408 |
Target: 5'- cGCCCGcgcgcagaACUCCCGCCgCGGCCCgcgcagcuCCGCCg -3' miRNA: 3'- aCGGGC--------UGGGGGCGG-GCUGGG--------GGCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 1499 | 0.67 | 0.329066 |
Target: 5'- cGCCCGcGCCCgaggcggCgGCCCGGCCguCCagCGCCg -3' miRNA: 3'- aCGGGC-UGGG-------GgCGGGCUGG--GG--GCGG- -5' |
|||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 1677 | 0.68 | 0.284113 |
Target: 5'- gGCCUccacgcgcgcgaaGACCCCCgGCCCGAacaCgCgGCCg -3' miRNA: 3'- aCGGG-------------CUGGGGG-CGGGCUg--GgGgCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home