Results 21 - 40 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5104 | 5' | -68.6 | NC_001798.1 | + | 103492 | 0.66 | 0.40277 |
Target: 5'- gGUCCagGGCCagCUCGCCCgGGUCCCCGCUg -3' miRNA: 3'- aCGGG--CUGG--GGGCGGG-CUGGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 103982 | 0.66 | 0.40277 |
Target: 5'- aGCCCaGGCCCCUGUUCGuauuguauCCCCaagGCa -3' miRNA: 3'- aCGGG-CUGGGGGCGGGCu-------GGGGg--CGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 151269 | 0.66 | 0.40277 |
Target: 5'- cGUgCCGGCCCgcacggCCGCCuCGGCCuCCaCGCg -3' miRNA: 3'- aCG-GGCUGGG------GGCGG-GCUGG-GG-GCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 151555 | 0.66 | 0.40277 |
Target: 5'- gGCCC-ACCCCCaCagGAUCCCUGCg -3' miRNA: 3'- aCGGGcUGGGGGcGggCUGGGGGCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 151649 | 0.66 | 0.40277 |
Target: 5'- gGCCCGccucgaacAUCUCCGUguCCGugCugCCCGCCu -3' miRNA: 3'- aCGGGC--------UGGGGGCG--GGCugG--GGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 107215 | 0.66 | 0.395019 |
Target: 5'- gGCCCucauGCCCCCGaCCG-CgCCCGgCa -3' miRNA: 3'- aCGGGc---UGGGGGCgGGCuGgGGGCgG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 48365 | 0.66 | 0.395019 |
Target: 5'- cGCCCGGggcCgCCCCGCggggCGugCCgCCGCg -3' miRNA: 3'- aCGGGCU---G-GGGGCGg---GCugGG-GGCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 27940 | 0.66 | 0.395019 |
Target: 5'- gGuCCCGGCgCCgGCCgCG-CCCCgGCg -3' miRNA: 3'- aC-GGGCUGgGGgCGG-GCuGGGGgCGg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 22615 | 0.66 | 0.395019 |
Target: 5'- cUGCCaaccACCCCC-CCCcACUgCCGCCc -3' miRNA: 3'- -ACGGgc--UGGGGGcGGGcUGGgGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 29829 | 0.66 | 0.395019 |
Target: 5'- gGCa-GACCCCCGgCacggugagagggCGACCCCCGg- -3' miRNA: 3'- aCGggCUGGGGGCgG------------GCUGGGGGCgg -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 127109 | 0.66 | 0.395019 |
Target: 5'- aGCCgGACCucgaguCCC-CCCGgggguuugggauGCCCgCCGCCc -3' miRNA: 3'- aCGGgCUGG------GGGcGGGC------------UGGG-GGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 27975 | 0.66 | 0.39425 |
Target: 5'- gUGCCgCG-CCCCgGCgcuccagCCGugCCgCGCCc -3' miRNA: 3'- -ACGG-GCuGGGGgCG-------GGCugGGgGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 91501 | 0.66 | 0.387366 |
Target: 5'- -cCCCGGCUCuuaCCGgCgGACCCgCGCCc -3' miRNA: 3'- acGGGCUGGG---GGCgGgCUGGGgGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 121688 | 0.66 | 0.387366 |
Target: 5'- cGCgCGGCUggggGCCgCGGCUCCCGCCg -3' miRNA: 3'- aCGgGCUGGggg-CGG-GCUGGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 48084 | 0.66 | 0.387366 |
Target: 5'- aGCaCCG-CCCCaccgaGCCCcacggcgccgugGACCCCCcgggugGCCg -3' miRNA: 3'- aCG-GGCuGGGGg----CGGG------------CUGGGGG------CGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 32194 | 0.66 | 0.387366 |
Target: 5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3' miRNA: 3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 32149 | 0.66 | 0.387366 |
Target: 5'- cGCCUccuccuCCUCCGCCUccuccuCCUCCGCCu -3' miRNA: 3'- aCGGGcu----GGGGGCGGGcu----GGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 153170 | 0.66 | 0.387366 |
Target: 5'- aGCuCCgGGgCUCCGCCgGccgaggccGCCCUCGCCg -3' miRNA: 3'- aCG-GG-CUgGGGGCGGgC--------UGGGGGCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 134728 | 0.66 | 0.387366 |
Target: 5'- aGCCCGGCgacggguuCUCCGcCCCGGCgCUgGUCg -3' miRNA: 3'- aCGGGCUG--------GGGGC-GGGCUGgGGgCGG- -5' |
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5104 | 5' | -68.6 | NC_001798.1 | + | 89275 | 0.66 | 0.387366 |
Target: 5'- gGaCCCgGGCCCCCugguacccaacGUgCCGGCCCCCGg- -3' miRNA: 3'- aC-GGG-CUGGGGG-----------CG-GGCUGGGGGCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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