miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5105 3' -57.3 NC_001798.1 + 148773 1.07 0.002517
Target:  5'- cCCACCCACCAAGACAGGGAGCCAGAAc -3'
miRNA:   3'- -GGUGGGUGGUUCUGUCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 111865 0.75 0.33587
Target:  5'- gCCGCUCACCAGGggcuccagcgaGCucGGGAGCCGGGGg -3'
miRNA:   3'- -GGUGGGUGGUUC-----------UGu-CCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 3886 0.75 0.33587
Target:  5'- gCGCCC-CgGGGGCGGGGGGCCGGc- -3'
miRNA:   3'- gGUGGGuGgUUCUGUCCCUCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 7788 0.75 0.359109
Target:  5'- aCCGCCC-CCGcuGGC-GGGAGCCAGGGu -3'
miRNA:   3'- -GGUGGGuGGUu-CUGuCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 32883 0.73 0.444324
Target:  5'- aCCACCgGCCGAGGCGccucGGGGGCaGGGGg -3'
miRNA:   3'- -GGUGGgUGGUUCUGU----CCCUCGgUCUU- -5'
5105 3' -57.3 NC_001798.1 + 74501 0.73 0.453457
Target:  5'- aUCACCCACCcccugcggggcGAGAuCGGGGGGCuCGGGg -3'
miRNA:   3'- -GGUGGGUGG-----------UUCU-GUCCCUCG-GUCUu -5'
5105 3' -57.3 NC_001798.1 + 125304 0.73 0.462691
Target:  5'- aCCGCCCgcACCA--GCucGGGGGCCAGGAa -3'
miRNA:   3'- -GGUGGG--UGGUucUGu-CCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 97560 0.72 0.48145
Target:  5'- aCGCCCGCgAgcgaGGACGGGGAGCgCGGc- -3'
miRNA:   3'- gGUGGGUGgU----UCUGUCCCUCG-GUCuu -5'
5105 3' -57.3 NC_001798.1 + 111571 0.72 0.510255
Target:  5'- aCACCCACCAcAGcucccugaGCGGGGGGCCcGGc -3'
miRNA:   3'- gGUGGGUGGU-UC--------UGUCCCUCGGuCUu -5'
5105 3' -57.3 NC_001798.1 + 83731 0.72 0.510255
Target:  5'- aCCGCCCACC-AGAUAGcGGcccCCAGAAa -3'
miRNA:   3'- -GGUGGGUGGuUCUGUC-CCuc-GGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 5903 0.72 0.529853
Target:  5'- uCCGCCCcgaggcggGCCcGGACGGGGGGCgGGc- -3'
miRNA:   3'- -GGUGGG--------UGGuUCUGUCCCUCGgUCuu -5'
5105 3' -57.3 NC_001798.1 + 19899 0.71 0.539755
Target:  5'- aCCACCgcggacaGCCAGGGCuGGGAGCCc--- -3'
miRNA:   3'- -GGUGGg------UGGUUCUGuCCCUCGGucuu -5'
5105 3' -57.3 NC_001798.1 + 139406 0.71 0.539755
Target:  5'- uCCGCCC-CCAcaGCAGcccGGGGCCAGAc -3'
miRNA:   3'- -GGUGGGuGGUucUGUC---CCUCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 31967 0.71 0.549719
Target:  5'- cUCGCCCcCCAGGGgGuGGGGGCCAaGAGg -3'
miRNA:   3'- -GGUGGGuGGUUCUgU-CCCUCGGU-CUU- -5'
5105 3' -57.3 NC_001798.1 + 146014 0.71 0.55974
Target:  5'- gCCACCCcccaaacaGCCAAGGCgcgguGGGGGGCguGGu -3'
miRNA:   3'- -GGUGGG--------UGGUUCUG-----UCCCUCGguCUu -5'
5105 3' -57.3 NC_001798.1 + 83251 0.71 0.55974
Target:  5'- -gACCCGCCGAGgacucACGGGGuGCUGGGGg -3'
miRNA:   3'- ggUGGGUGGUUC-----UGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 33444 0.71 0.56981
Target:  5'- gCCGCaCCACCGgcgcgaAGcCAGGG-GCCAGGGa -3'
miRNA:   3'- -GGUG-GGUGGU------UCuGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 97587 0.71 0.579925
Target:  5'- -nGCCCcgaGCCAGGggcGCAGGG-GCCGGAGa -3'
miRNA:   3'- ggUGGG---UGGUUC---UGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 30128 0.71 0.58906
Target:  5'- cCCcCCCuuCCGaacaaaaagcagcGGGCGGGGGGCCGGGGu -3'
miRNA:   3'- -GGuGGGu-GGU-------------UCUGUCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 2459 0.7 0.600259
Target:  5'- gCCGCCCugCGGGuCGGGGcccucggcgGGCCGGc- -3'
miRNA:   3'- -GGUGGGugGUUCuGUCCC---------UCGGUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.