miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5105 3' -57.3 NC_001798.1 + 47369 0.66 0.824221
Target:  5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3'
miRNA:   3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5'
5105 3' -57.3 NC_001798.1 + 86070 0.66 0.824221
Target:  5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3'
miRNA:   3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 133841 0.66 0.821663
Target:  5'- gCUuCCCACCGAGgccuggcccaugauGCAGGGGGCgGuGAAc -3'
miRNA:   3'- -GGuGGGUGGUUC--------------UGUCCCUCGgU-CUU- -5'
5105 3' -57.3 NC_001798.1 + 6191 0.67 0.815634
Target:  5'- uCCACCCACUGcagccuuaucgcAGGuacggugaccCGGGGGGCCGGc- -3'
miRNA:   3'- -GGUGGGUGGU------------UCU----------GUCCCUCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 132968 0.67 0.815634
Target:  5'- cCCAggCCGCCGAGACGGaGGAGgUGGGc -3'
miRNA:   3'- -GGUg-GGUGGUUCUGUC-CCUCgGUCUu -5'
5105 3' -57.3 NC_001798.1 + 151903 0.67 0.814766
Target:  5'- cCCGCCCGCUgcuuuuuguucggAAGGgGGGGAGaaAGGGg -3'
miRNA:   3'- -GGUGGGUGG-------------UUCUgUCCCUCggUCUU- -5'
5105 3' -57.3 NC_001798.1 + 52273 0.67 0.806881
Target:  5'- uCCGCCCACCccgcguuugcGGACGuGGAGCaGGAGg -3'
miRNA:   3'- -GGUGGGUGGu---------UCUGUcCCUCGgUCUU- -5'
5105 3' -57.3 NC_001798.1 + 7063 0.67 0.806881
Target:  5'- cCCACCC-CCAaaccccgguugGGGCGGGcAGCCgAGAc -3'
miRNA:   3'- -GGUGGGuGGU-----------UCUGUCCcUCGG-UCUu -5'
5105 3' -57.3 NC_001798.1 + 2257 0.67 0.805997
Target:  5'- gCGCgCCGCCGggGGGCGGGGcggcgcagcgcgcGGCCAGc- -3'
miRNA:   3'- gGUG-GGUGGU--UCUGUCCC-------------UCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 74640 0.67 0.788909
Target:  5'- aCCgGCCCcCCGAGGCcccccGGGGGGCCucGGGc -3'
miRNA:   3'- -GG-UGGGuGGUUCUG-----UCCCUCGG--UCUu -5'
5105 3' -57.3 NC_001798.1 + 135207 0.67 0.788909
Target:  5'- gCCGCCCuCgCGGGccuCGGGGAGgCCGGGc -3'
miRNA:   3'- -GGUGGGuG-GUUCu--GUCCCUC-GGUCUu -5'
5105 3' -57.3 NC_001798.1 + 124493 0.67 0.779707
Target:  5'- cCCcCCCGCCAuggcGGGgGGGGGGCUgcGGGc -3'
miRNA:   3'- -GGuGGGUGGU----UCUgUCCCUCGG--UCUu -5'
5105 3' -57.3 NC_001798.1 + 84216 0.67 0.779707
Target:  5'- gCGCCCcCCGGGGCGccGuGGGGCCGGu- -3'
miRNA:   3'- gGUGGGuGGUUCUGU--C-CCUCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 42459 0.67 0.779707
Target:  5'- gCCAcCCCACgCAucguCAGGGAGCCGu-- -3'
miRNA:   3'- -GGU-GGGUG-GUucu-GUCCCUCGGUcuu -5'
5105 3' -57.3 NC_001798.1 + 59152 0.67 0.770373
Target:  5'- gCACCCACgcaggCGAGGCGGGGGcGCCc--- -3'
miRNA:   3'- gGUGGGUG-----GUUCUGUCCCU-CGGucuu -5'
5105 3' -57.3 NC_001798.1 + 153502 0.67 0.770373
Target:  5'- aCACCUGCgGgcggggAGACAcGGGGGUCGGAGg -3'
miRNA:   3'- gGUGGGUGgU------UCUGU-CCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 66843 0.67 0.770373
Target:  5'- gCGCCCagGCCGGGGuuucCGGGGAgucGCCGGGg -3'
miRNA:   3'- gGUGGG--UGGUUCU----GUCCCU---CGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 94564 0.67 0.770373
Target:  5'- uCCGaggCCGCCAAGGCGcGGGucGCCAGc- -3'
miRNA:   3'- -GGUg--GGUGGUUCUGU-CCCu-CGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 150902 0.67 0.769433
Target:  5'- gCCGCCCccgcGCCGGGGCgcucuucGGGGGGCgggCGGGAc -3'
miRNA:   3'- -GGUGGG----UGGUUCUG-------UCCCUCG---GUCUU- -5'
5105 3' -57.3 NC_001798.1 + 68448 0.67 0.769433
Target:  5'- -gGCUCGCCGAGcaccGCGGGGAuugcgagcucgcgGCCGGGAc -3'
miRNA:   3'- ggUGGGUGGUUC----UGUCCCU-------------CGGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.