miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 148655 1.08 0.000767
Target:  5'- cCUCCCACUCCUGCCCACCACCCCCAGg -3'
miRNA:   3'- -GAGGGUGAGGACGGGUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 114064 0.82 0.057669
Target:  5'- --gCCGCUCCUGCCCGCgAcCCCCCGGg -3'
miRNA:   3'- gagGGUGAGGACGGGUGgU-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 49333 0.81 0.072737
Target:  5'- -cCCCAC-CCUGCCCGCCACCCgCGa -3'
miRNA:   3'- gaGGGUGaGGACGGGUGGUGGGgGUc -5'
5106 3' -62.7 NC_001798.1 + 59211 0.78 0.123872
Target:  5'- uUCgCCGCUCCcGCCCGCgACCCCgGGg -3'
miRNA:   3'- gAG-GGUGAGGaCGGGUGgUGGGGgUC- -5'
5106 3' -62.7 NC_001798.1 + 33649 0.77 0.140251
Target:  5'- -gCCCGCacaCCUGCCCGCCACgCCCGc -3'
miRNA:   3'- gaGGGUGa--GGACGGGUGGUGgGGGUc -5'
5106 3' -62.7 NC_001798.1 + 33756 0.77 0.140251
Target:  5'- -gCCCGCacaCCUGCCCGCCACgCCCGc -3'
miRNA:   3'- gaGGGUGa--GGACGGGUGGUGgGGGUc -5'
5106 3' -62.7 NC_001798.1 + 86049 0.74 0.211668
Target:  5'- aUCCUGCUgCUGCUCGCCggcACCCCCGc -3'
miRNA:   3'- gAGGGUGAgGACGGGUGG---UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 55143 0.74 0.227138
Target:  5'- cCUgUCGC-CCaUGCCCGcCCGCCCCCGGa -3'
miRNA:   3'- -GAgGGUGaGG-ACGGGU-GGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 129760 0.73 0.237975
Target:  5'- -gCCCGCccUCCUGCCaCGCUcacGCCCCCAc -3'
miRNA:   3'- gaGGGUG--AGGACGG-GUGG---UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 81972 0.73 0.237975
Target:  5'- aUCCCGcCUCC-GCCCGCCGaaggagcggucgUCCCCGGg -3'
miRNA:   3'- gAGGGU-GAGGaCGGGUGGU------------GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 14600 0.73 0.249242
Target:  5'- -aCCCACUgauaCCU-CCCACCccccGCCCCCAGu -3'
miRNA:   3'- gaGGGUGA----GGAcGGGUGG----UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 23810 0.73 0.266963
Target:  5'- -gCCCGgggCCgGCCCcCCGCCCCCGGg -3'
miRNA:   3'- gaGGGUga-GGaCGGGuGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 82496 0.72 0.279335
Target:  5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3'
miRNA:   3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 82466 0.72 0.279335
Target:  5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3'
miRNA:   3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 82436 0.72 0.279335
Target:  5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3'
miRNA:   3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 82406 0.72 0.279335
Target:  5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3'
miRNA:   3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 82526 0.72 0.279335
Target:  5'- --gCCGCcCCUGCCCcaGCCGCCCCUg- -3'
miRNA:   3'- gagGGUGaGGACGGG--UGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 71793 0.72 0.292158
Target:  5'- -aCCCACUgggaCCUGaccCCCACCACCCCg-- -3'
miRNA:   3'- gaGGGUGA----GGAC---GGGUGGUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 130239 0.72 0.292158
Target:  5'- -gCCCGgguCUCCgggcgGCCCGCCACgCCUAGa -3'
miRNA:   3'- gaGGGU---GAGGa----CGGGUGGUGgGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 89443 0.72 0.292158
Target:  5'- cCUCCUugUCgagGCCCcgaaACCGCCCCUGGg -3'
miRNA:   3'- -GAGGGugAGga-CGGG----UGGUGGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.