miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 282 0.66 0.594582
Target:  5'- aCUCCCAag-CUcCCCGCC-CCCCCGa -3'
miRNA:   3'- -GAGGGUgagGAcGGGUGGuGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 360 0.68 0.505623
Target:  5'- -aCCCGC-CC-GCCCgcacacgguuccccGCCACCCCCu- -3'
miRNA:   3'- gaGGGUGaGGaCGGG--------------UGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 514 0.68 0.480816
Target:  5'- -cCCCGCcCCUccccccgcGCCCGCgGCCCCgAGc -3'
miRNA:   3'- gaGGGUGaGGA--------CGGGUGgUGGGGgUC- -5'
5106 3' -62.7 NC_001798.1 + 584 0.72 0.298077
Target:  5'- cCUCCCGCUCCUGCgggggggcucgggCCACCugACCUUCGu -3'
miRNA:   3'- -GAGGGUGAGGACG-------------GGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 679 0.69 0.4452
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 709 0.69 0.4452
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 739 0.69 0.4452
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 769 0.69 0.4452
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 799 0.69 0.4452
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 829 0.69 0.4452
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 859 0.66 0.633778
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCn- -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 889 0.69 0.41948
Target:  5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGa -3'
miRNA:   3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 1034 0.67 0.536658
Target:  5'- uCUCCCcauCUCCccccuCCC-CCGCUCCCGGa -3'
miRNA:   3'- -GAGGGu--GAGGac---GGGuGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 1161 0.66 0.594582
Target:  5'- -cCCCGCggCggucCCCACCACCUCCAc -3'
miRNA:   3'- gaGGGUGagGac--GGGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 1334 0.66 0.626907
Target:  5'- aCUCCCgccgcggcccgcgcaGCUCCgccgGgCCGCCGCgcacggcgucgcgCCCCAGc -3'
miRNA:   3'- -GAGGG---------------UGAGGa---CgGGUGGUG-------------GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 2089 0.67 0.562531
Target:  5'- --aCCACUCCgggggggGCCCGCC-CCCggcgcggcccgcggCCAGg -3'
miRNA:   3'- gagGGUGAGGa------CGGGUGGuGGG--------------GGUC- -5'
5106 3' -62.7 NC_001798.1 + 3133 0.67 0.546196
Target:  5'- -gCCCGcCUCCgcgcGCCgGCCGCCgCCAc -3'
miRNA:   3'- gaGGGU-GAGGa---CGGgUGGUGGgGGUc -5'
5106 3' -62.7 NC_001798.1 + 3533 0.66 0.57511
Target:  5'- -cCCCAg-CCgaagcgGCCCGCCGCcauggcguaCCCCAGg -3'
miRNA:   3'- gaGGGUgaGGa-----CGGGUGGUG---------GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 4114 0.66 0.603381
Target:  5'- -gCCCugggcggGCUCg-GCCggggCGCCGCCCCCGGg -3'
miRNA:   3'- gaGGG-------UGAGgaCGG----GUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 4807 0.69 0.4452
Target:  5'- uUCUC-CUCCgGCCCACCguGCCaCCCGa -3'
miRNA:   3'- gAGGGuGAGGaCGGGUGG--UGG-GGGUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.