Results 1 - 20 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5106 | 3' | -62.7 | NC_001798.1 | + | 282 | 0.66 | 0.594582 |
Target: 5'- aCUCCCAag-CUcCCCGCC-CCCCCGa -3' miRNA: 3'- -GAGGGUgagGAcGGGUGGuGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 360 | 0.68 | 0.505623 |
Target: 5'- -aCCCGC-CC-GCCCgcacacgguuccccGCCACCCCCu- -3' miRNA: 3'- gaGGGUGaGGaCGGG--------------UGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 514 | 0.68 | 0.480816 |
Target: 5'- -cCCCGCcCCUccccccgcGCCCGCgGCCCCgAGc -3' miRNA: 3'- gaGGGUGaGGA--------CGGGUGgUGGGGgUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 584 | 0.72 | 0.298077 |
Target: 5'- cCUCCCGCUCCUGCgggggggcucgggCCACCugACCUUCGu -3' miRNA: 3'- -GAGGGUGAGGACG-------------GGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 679 | 0.69 | 0.4452 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 709 | 0.69 | 0.4452 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 739 | 0.69 | 0.4452 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 769 | 0.69 | 0.4452 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 799 | 0.69 | 0.4452 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 829 | 0.69 | 0.4452 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGc -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 859 | 0.66 | 0.633778 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCn- -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 889 | 0.69 | 0.41948 |
Target: 5'- -gCCCGC-CCgacccccGCCCGCCcgACCCCCGa -3' miRNA: 3'- gaGGGUGaGGa------CGGGUGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 1034 | 0.67 | 0.536658 |
Target: 5'- uCUCCCcauCUCCccccuCCC-CCGCUCCCGGa -3' miRNA: 3'- -GAGGGu--GAGGac---GGGuGGUGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 1161 | 0.66 | 0.594582 |
Target: 5'- -cCCCGCggCggucCCCACCACCUCCAc -3' miRNA: 3'- gaGGGUGagGac--GGGUGGUGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 1334 | 0.66 | 0.626907 |
Target: 5'- aCUCCCgccgcggcccgcgcaGCUCCgccgGgCCGCCGCgcacggcgucgcgCCCCAGc -3' miRNA: 3'- -GAGGG---------------UGAGGa---CgGGUGGUG-------------GGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 2089 | 0.67 | 0.562531 |
Target: 5'- --aCCACUCCgggggggGCCCGCC-CCCggcgcggcccgcggCCAGg -3' miRNA: 3'- gagGGUGAGGa------CGGGUGGuGGG--------------GGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 3133 | 0.67 | 0.546196 |
Target: 5'- -gCCCGcCUCCgcgcGCCgGCCGCCgCCAc -3' miRNA: 3'- gaGGGU-GAGGa---CGGgUGGUGGgGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 3533 | 0.66 | 0.57511 |
Target: 5'- -cCCCAg-CCgaagcgGCCCGCCGCcauggcguaCCCCAGg -3' miRNA: 3'- gaGGGUgaGGa-----CGGGUGGUG---------GGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 4114 | 0.66 | 0.603381 |
Target: 5'- -gCCCugggcggGCUCg-GCCggggCGCCGCCCCCGGg -3' miRNA: 3'- gaGGG-------UGAGgaCGG----GUGGUGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 4807 | 0.69 | 0.4452 |
Target: 5'- uUCUC-CUCCgGCCCACCguGCCaCCCGa -3' miRNA: 3'- gAGGGuGAGGaCGGGUGG--UGG-GGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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