miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 63051 0.66 0.604359
Target:  5'- uUCCCuuUCCccagCCGCCACCCCCc- -3'
miRNA:   3'- gAGGGugAGGacg-GGUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 134380 0.66 0.604359
Target:  5'- --gCCGCUCCUcGCgCCGCC-CUCCUGGa -3'
miRNA:   3'- gagGGUGAGGA-CG-GGUGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 31953 0.66 0.604359
Target:  5'- -cCCCGCgCUcGCCCcUCGcCCCCCAGg -3'
miRNA:   3'- gaGGGUGaGGaCGGGuGGU-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 57834 0.66 0.604359
Target:  5'- cCUCCCAaccuaacacCCUaacagugauggGCCCGCCugCCCCc- -3'
miRNA:   3'- -GAGGGUga-------GGA-----------CGGGUGGugGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 102900 0.66 0.604359
Target:  5'- aUCCCGg-CCUG-CCGCCGCCgCUCGGc -3'
miRNA:   3'- gAGGGUgaGGACgGGUGGUGG-GGGUC- -5'
5106 3' -62.7 NC_001798.1 + 4114 0.66 0.603381
Target:  5'- -gCCCugggcggGCUCg-GCCggggCGCCGCCCCCGGg -3'
miRNA:   3'- gaGGG-------UGAGgaCGG----GUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 282 0.66 0.594582
Target:  5'- aCUCCCAag-CUcCCCGCC-CCCCCGa -3'
miRNA:   3'- -GAGGGUgagGAcGGGUGGuGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 1161 0.66 0.594582
Target:  5'- -cCCCGCggCggucCCCACCACCUCCAc -3'
miRNA:   3'- gaGGGUGagGac--GGGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 127652 0.66 0.594582
Target:  5'- uCUCCCGCcUCUGUCaCGCCAa-CCCGGc -3'
miRNA:   3'- -GAGGGUGaGGACGG-GUGGUggGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 125281 0.66 0.594582
Target:  5'- aCUCCCGaaaCCgcagGCgCGCCACCgCCCGc -3'
miRNA:   3'- -GAGGGUga-GGa---CGgGUGGUGG-GGGUc -5'
5106 3' -62.7 NC_001798.1 + 134429 0.66 0.584831
Target:  5'- -aCCCGCUggcCCUGUCCGCgCGCgucgccgagcaCCCCGGc -3'
miRNA:   3'- gaGGGUGA---GGACGGGUG-GUG-----------GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 135195 0.66 0.584831
Target:  5'- -gCCCAgCUCCUGgCCGCC-CUCgCGGg -3'
miRNA:   3'- gaGGGU-GAGGACgGGUGGuGGGgGUC- -5'
5106 3' -62.7 NC_001798.1 + 150061 0.66 0.584831
Target:  5'- --gCCGC-CCUcuugGCCC-CCACCCCCuGg -3'
miRNA:   3'- gagGGUGaGGA----CGGGuGGUGGGGGuC- -5'
5106 3' -62.7 NC_001798.1 + 25448 0.66 0.584831
Target:  5'- -cCCCGCcCCccggcggcgcGCCCGCCGCCUUCGGc -3'
miRNA:   3'- gaGGGUGaGGa---------CGGGUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 33604 0.66 0.584831
Target:  5'- -aCCCGCaCUUacGCCCGugcCCACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGA--CGGGU---GGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 74253 0.66 0.584831
Target:  5'- -aCCCGCacggCCUGCCCGCgggaaCGCCCgCGu -3'
miRNA:   3'- gaGGGUGa---GGACGGGUG-----GUGGGgGUc -5'
5106 3' -62.7 NC_001798.1 + 121266 0.66 0.584831
Target:  5'- gUCCCGCugUCC-GCCCucgugcgcgGCCGCCCCg-- -3'
miRNA:   3'- gAGGGUG--AGGaCGGG---------UGGUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 99536 0.66 0.57511
Target:  5'- -aCCCGCaaCUUGCUgACgACCCCCAa -3'
miRNA:   3'- gaGGGUGa-GGACGGgUGgUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 58939 0.66 0.57511
Target:  5'- --gCCGCUCCcccGCCgACCAgCCUCAGc -3'
miRNA:   3'- gagGGUGAGGa--CGGgUGGUgGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 3533 0.66 0.57511
Target:  5'- -cCCCAg-CCgaagcgGCCCGCCGCcauggcguaCCCCAGg -3'
miRNA:   3'- gaGGGUgaGGa-----CGGGUGGUG---------GGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.