miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 5' -57.2 NC_001798.1 + 148690 0.96 0.014955
Target:  5'- cGGCCAGACGUGC-UGCUCUGCACGAUc -3'
miRNA:   3'- -CCGGUCUGCACGcACGAGACGUGCUA- -5'
5106 5' -57.2 NC_001798.1 + 133018 0.69 0.672637
Target:  5'- cGGCCGGACGUcgcgccggccgagGUGgucgcGCUCaUGCGCGGc -3'
miRNA:   3'- -CCGGUCUGCA-------------CGCa----CGAG-ACGUGCUa -5'
5106 5' -57.2 NC_001798.1 + 97702 0.69 0.703934
Target:  5'- uGGCCAGccucggGCGcUGCGUGCgcgagCaGCGCGGg -3'
miRNA:   3'- -CCGGUC------UGC-ACGCACGa----GaCGUGCUa -5'
5106 5' -57.2 NC_001798.1 + 30542 0.68 0.743419
Target:  5'- gGGC--GACGUGUGUGCcgUgUGCACGGa -3'
miRNA:   3'- -CCGguCUGCACGCACG--AgACGUGCUa -5'
5106 5' -57.2 NC_001798.1 + 52663 0.68 0.75307
Target:  5'- cGCUAcGCGUGCGUcCUCcGCGCGAc -3'
miRNA:   3'- cCGGUcUGCACGCAcGAGaCGUGCUa -5'
5106 5' -57.2 NC_001798.1 + 90549 0.67 0.78135
Target:  5'- aGGCCAG-CGcGCGcccGCUUcGCACGAa -3'
miRNA:   3'- -CCGGUCuGCaCGCa--CGAGaCGUGCUa -5'
5106 5' -57.2 NC_001798.1 + 151786 0.67 0.78135
Target:  5'- -cCCAGGCGUGCGgggcgGCgggCUGCuuGAc -3'
miRNA:   3'- ccGGUCUGCACGCa----CGa--GACGugCUa -5'
5106 5' -57.2 NC_001798.1 + 52036 0.67 0.808427
Target:  5'- uGGCCcGGgGUGCGcgcGCUCcugggGCGCGAc -3'
miRNA:   3'- -CCGGuCUgCACGCa--CGAGa----CGUGCUa -5'
5106 5' -57.2 NC_001798.1 + 139426 0.67 0.817145
Target:  5'- gGGCCAGAcccgcCGUGCG-GUUCagGgACGAg -3'
miRNA:   3'- -CCGGUCU-----GCACGCaCGAGa-CgUGCUa -5'
5106 5' -57.2 NC_001798.1 + 103951 0.67 0.817145
Target:  5'- cGCCaAGcCGaUGCGUGC-CUGCugGGc -3'
miRNA:   3'- cCGG-UCuGC-ACGCACGaGACGugCUa -5'
5106 5' -57.2 NC_001798.1 + 97639 0.66 0.825696
Target:  5'- gGGCCgccgcGGACGUGCGggagcgccgGCggCUGUACGc- -3'
miRNA:   3'- -CCGG-----UCUGCACGCa--------CGa-GACGUGCua -5'
5106 5' -57.2 NC_001798.1 + 64725 0.66 0.842262
Target:  5'- gGGCCgAGGCG-GCGguggGCaUgaGCGCGAUg -3'
miRNA:   3'- -CCGG-UCUGCaCGCa---CG-AgaCGUGCUA- -5'
5106 5' -57.2 NC_001798.1 + 30766 0.66 0.858066
Target:  5'- aGGCCgAGGCG-GcCGUGCgggCcgGCACGGc -3'
miRNA:   3'- -CCGG-UCUGCaC-GCACGa--Ga-CGUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.