Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5106 | 5' | -57.2 | NC_001798.1 | + | 148690 | 0.96 | 0.014955 |
Target: 5'- cGGCCAGACGUGC-UGCUCUGCACGAUc -3' miRNA: 3'- -CCGGUCUGCACGcACGAGACGUGCUA- -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 133018 | 0.69 | 0.672637 |
Target: 5'- cGGCCGGACGUcgcgccggccgagGUGgucgcGCUCaUGCGCGGc -3' miRNA: 3'- -CCGGUCUGCA-------------CGCa----CGAG-ACGUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 97702 | 0.69 | 0.703934 |
Target: 5'- uGGCCAGccucggGCGcUGCGUGCgcgagCaGCGCGGg -3' miRNA: 3'- -CCGGUC------UGC-ACGCACGa----GaCGUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 30542 | 0.68 | 0.743419 |
Target: 5'- gGGC--GACGUGUGUGCcgUgUGCACGGa -3' miRNA: 3'- -CCGguCUGCACGCACG--AgACGUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 52663 | 0.68 | 0.75307 |
Target: 5'- cGCUAcGCGUGCGUcCUCcGCGCGAc -3' miRNA: 3'- cCGGUcUGCACGCAcGAGaCGUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 90549 | 0.67 | 0.78135 |
Target: 5'- aGGCCAG-CGcGCGcccGCUUcGCACGAa -3' miRNA: 3'- -CCGGUCuGCaCGCa--CGAGaCGUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 151786 | 0.67 | 0.78135 |
Target: 5'- -cCCAGGCGUGCGgggcgGCgggCUGCuuGAc -3' miRNA: 3'- ccGGUCUGCACGCa----CGa--GACGugCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 52036 | 0.67 | 0.808427 |
Target: 5'- uGGCCcGGgGUGCGcgcGCUCcugggGCGCGAc -3' miRNA: 3'- -CCGGuCUgCACGCa--CGAGa----CGUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 139426 | 0.67 | 0.817145 |
Target: 5'- gGGCCAGAcccgcCGUGCG-GUUCagGgACGAg -3' miRNA: 3'- -CCGGUCU-----GCACGCaCGAGa-CgUGCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 103951 | 0.67 | 0.817145 |
Target: 5'- cGCCaAGcCGaUGCGUGC-CUGCugGGc -3' miRNA: 3'- cCGG-UCuGC-ACGCACGaGACGugCUa -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 97639 | 0.66 | 0.825696 |
Target: 5'- gGGCCgccgcGGACGUGCGggagcgccgGCggCUGUACGc- -3' miRNA: 3'- -CCGG-----UCUGCACGCa--------CGa-GACGUGCua -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 64725 | 0.66 | 0.842262 |
Target: 5'- gGGCCgAGGCG-GCGguggGCaUgaGCGCGAUg -3' miRNA: 3'- -CCGG-UCUGCaCGCa---CG-AgaCGUGCUA- -5' |
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5106 | 5' | -57.2 | NC_001798.1 | + | 30766 | 0.66 | 0.858066 |
Target: 5'- aGGCCgAGGCG-GcCGUGCgggCcgGCACGGc -3' miRNA: 3'- -CCGG-UCUGCaC-GCACGa--Ga-CGUGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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