Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5107 | 3' | -55.4 | NC_001798.1 | + | 154361 | 0.66 | 0.920598 |
Target: 5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3' miRNA: 3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 153619 | 0.79 | 0.291185 |
Target: 5'- gGGGGUcGGAGGGGCgucAGggGGUcggaGGGGAGg -3' miRNA: 3'- -UCCUA-CCUUCCCG---UCuuCUA----CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 153562 | 0.72 | 0.622409 |
Target: 5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3' miRNA: 3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 153524 | 0.72 | 0.622409 |
Target: 5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3' miRNA: 3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 152176 | 0.66 | 0.914821 |
Target: 5'- gGGGAaaaGGggGGGCcuGAGAcccGGGGGu -3' miRNA: 3'- -UCCUa--CCuuCCCGucUUCUa--CCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 150569 | 0.66 | 0.896043 |
Target: 5'- cGGGGcccgcgGGgcGGcGCGGAgacGGcgGGGGAGa -3' miRNA: 3'- -UCCUa-----CCuuCC-CGUCU---UCuaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 149899 | 0.76 | 0.408268 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 149869 | 0.76 | 0.408268 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 149839 | 0.76 | 0.408268 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 148414 | 0.72 | 0.643091 |
Target: 5'- cGGGGUGGGcgccGGGGCGGggG-UGGGcacGGGc -3' miRNA: 3'- -UCCUACCU----UCCCGUCuuCuACCC---CUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 148374 | 0.68 | 0.835988 |
Target: 5'- cAGGGUgaGGAGGGGCGGgcG-UGGcGGGc -3' miRNA: 3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 148267 | 0.68 | 0.835988 |
Target: 5'- cAGGGUaaGGAGGGGCGGgcG-UGGcGGGc -3' miRNA: 3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 147621 | 0.75 | 0.470194 |
Target: 5'- gAGGggGGggGGGCgggcggaagagAGAAGAgagcagggguugGGGGAGa -3' miRNA: 3'- -UCCuaCCuuCCCG-----------UCUUCUa-----------CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 146353 | 0.66 | 0.926131 |
Target: 5'- aGGGggGGggGGGgAGAGGGaaagcaacGGGAa -3' miRNA: 3'- -UCCuaCCuuCCCgUCUUCUac------CCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 146305 | 0.73 | 0.560782 |
Target: 5'- uGGgcGGccGGGCgGGAGGAUGGcGGAGa -3' miRNA: 3'- uCCuaCCuuCCCG-UCUUCUACC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 146154 | 1.08 | 0.003322 |
Target: 5'- gAGGAUGGAAGGGCAGAAGAUGGGGAGu -3' miRNA: 3'- -UCCUACCUUCCCGUCUUCUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 146095 | 0.67 | 0.882346 |
Target: 5'- gAGGcgGGc-GGGCGaAGGAaGGGGGGg -3' miRNA: 3'- -UCCuaCCuuCCCGUcUUCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 146038 | 0.69 | 0.763945 |
Target: 5'- -cGGUGGggGGcgugguGguGAAcGAUGGGGGGa -3' miRNA: 3'- ucCUACCuuCC------CguCUU-CUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 145837 | 0.68 | 0.835988 |
Target: 5'- cGGGGUGGGAGuGGU----GGUGGGGGa -3' miRNA: 3'- -UCCUACCUUC-CCGucuuCUACCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 142827 | 0.7 | 0.714743 |
Target: 5'- cGGG-GGAAGGGUAGggGGaaaagaaaGGGGAc -3' miRNA: 3'- uCCUaCCUUCCCGUCuuCUa-------CCCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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