miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 5' -59 NC_001798.1 + 146189 1.05 0.002409
Target:  5'- cUCCUCCUGCAUCCCCUCGCCUUCCAUu -3'
miRNA:   3'- -AGGAGGACGUAGGGGAGCGGAAGGUA- -5'
5107 5' -59 NC_001798.1 + 562 0.71 0.471981
Target:  5'- cCCUCCcGCG-CCCCgUGCCUUCCc- -3'
miRNA:   3'- aGGAGGaCGUaGGGGaGCGGAAGGua -5'
5107 5' -59 NC_001798.1 + 22431 0.7 0.509937
Target:  5'- cUCCUCCUccGCGUCCuCCUC-CUUUCCc- -3'
miRNA:   3'- -AGGAGGA--CGUAGG-GGAGcGGAAGGua -5'
5107 5' -59 NC_001798.1 + 118515 0.7 0.539221
Target:  5'- cCCUCCcGCA-CCCC-CGCgUUCCGg -3'
miRNA:   3'- aGGAGGaCGUaGGGGaGCGgAAGGUa -5'
5107 5' -59 NC_001798.1 + 31942 0.7 0.549111
Target:  5'- uUCCUCCgccgccccGCGcucgCCCCUCGCCccCCAg -3'
miRNA:   3'- -AGGAGGa-------CGUa---GGGGAGCGGaaGGUa -5'
5107 5' -59 NC_001798.1 + 94205 0.68 0.650032
Target:  5'- cCCUgCUGCAgCUCCUCGCgCggcggUCCAa -3'
miRNA:   3'- aGGAgGACGUaGGGGAGCG-Ga----AGGUa -5'
5107 5' -59 NC_001798.1 + 42441 0.68 0.660172
Target:  5'- gCCUgCUGgAUCaCCCUCGCCaccCCAc -3'
miRNA:   3'- aGGAgGACgUAG-GGGAGCGGaa-GGUa -5'
5107 5' -59 NC_001798.1 + 152016 0.68 0.660172
Target:  5'- cUCCUcCCUGCc-UCCCUCGCCcccCCAg -3'
miRNA:   3'- -AGGA-GGACGuaGGGGAGCGGaa-GGUa -5'
5107 5' -59 NC_001798.1 + 46283 0.67 0.710369
Target:  5'- gUCaaagCCUGCGUCCuCCUCGCgCUUUgGc -3'
miRNA:   3'- -AGga--GGACGUAGG-GGAGCG-GAAGgUa -5'
5107 5' -59 NC_001798.1 + 23420 0.66 0.768341
Target:  5'- cUCCUCCUccGCcuccUCCuCCUCGUCUgcaUCCGc -3'
miRNA:   3'- -AGGAGGA--CGu---AGG-GGAGCGGA---AGGUa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.