miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 70531 0.66 0.302483
Target:  5'- gGCUCCGacacgaCCCACgCGCUggaggCCGCCgGGCu -3'
miRNA:   3'- -UGGGGCg-----GGGUG-GCGG-----GGCGGgCCGu -5'
5108 3' -70.9 NC_001798.1 + 57595 0.66 0.308884
Target:  5'- cCCCCGCgggCCCACCGUUaucgugCGUCCGGgGg -3'
miRNA:   3'- uGGGGCG---GGGUGGCGGg-----GCGGGCCgU- -5'
5108 3' -70.9 NC_001798.1 + 22623 0.66 0.308884
Target:  5'- cACCCCcCCCCACUGCCgCC-CCUGa-- -3'
miRNA:   3'- -UGGGGcGGGGUGGCGG-GGcGGGCcgu -5'
5108 3' -70.9 NC_001798.1 + 121967 0.66 0.308884
Target:  5'- cACCCgGUCCgCGCgCGCCCCaagcacgcgGCCucCGGCGu -3'
miRNA:   3'- -UGGGgCGGG-GUG-GCGGGG---------CGG--GCCGU- -5'
5108 3' -70.9 NC_001798.1 + 80783 0.66 0.308884
Target:  5'- gACUCgCGCCCCggcgggccggacGCCGCCCUGCgCGaCGu -3'
miRNA:   3'- -UGGG-GCGGGG------------UGGCGGGGCGgGCcGU- -5'
5108 3' -70.9 NC_001798.1 + 5602 0.66 0.308239
Target:  5'- cGCCCCGUuggUCCGCgggcgGCUCCGCCCcaaagggGGCGg -3'
miRNA:   3'- -UGGGGCG---GGGUGg----CGGGGCGGG-------CCGU- -5'
5108 3' -70.9 NC_001798.1 + 127792 0.66 0.306953
Target:  5'- gACCCCGauaguCCCCcgaaGCgGCCCCGaCCCaacagccuagaucuGGCGa -3'
miRNA:   3'- -UGGGGC-----GGGG----UGgCGGGGC-GGG--------------CCGU- -5'
5108 3' -70.9 NC_001798.1 + 91107 0.66 0.302483
Target:  5'- gACCCCGgUgCGCUGCUCCGCgggGGCGu -3'
miRNA:   3'- -UGGGGCgGgGUGGCGGGGCGgg-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 84435 0.66 0.302483
Target:  5'- uCCCCacCCCCGCCGCgCaGCgUGGCGg -3'
miRNA:   3'- uGGGGc-GGGGUGGCGgGgCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 58013 0.66 0.308884
Target:  5'- cACCCCGa-CCGCCGgCUCGCCgccauccgCGGCc -3'
miRNA:   3'- -UGGGGCggGGUGGCgGGGCGG--------GCCGu -5'
5108 3' -70.9 NC_001798.1 + 84894 0.66 0.308884
Target:  5'- gGCCgCGUCCC-CCGCgCCGUCUcGCGa -3'
miRNA:   3'- -UGGgGCGGGGuGGCGgGGCGGGcCGU- -5'
5108 3' -70.9 NC_001798.1 + 116437 0.66 0.308884
Target:  5'- cGCCgCCGacgaCCgGCCGCaCCGgCCGGCc -3'
miRNA:   3'- -UGG-GGCg---GGgUGGCGgGGCgGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 86206 0.66 0.315387
Target:  5'- aGCCCCaGCCCCAgcCCGaCCUgGaCCUGGg- -3'
miRNA:   3'- -UGGGG-CGGGGU--GGC-GGGgC-GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 154439 0.66 0.315387
Target:  5'- aGCCCCgcgcGCCCCcuuccCCGUCCCuccCCCGGa- -3'
miRNA:   3'- -UGGGG----CGGGGu----GGCGGGGc--GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 149234 0.66 0.315387
Target:  5'- uCCCCGUggCCCGCgggggCGUCgCCGgCCGGCGc -3'
miRNA:   3'- uGGGGCG--GGGUG-----GCGG-GGCgGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 147963 0.66 0.315387
Target:  5'- cACCCCcCCCCAacaaCCCCaaaggcgcguGCCCGGCc -3'
miRNA:   3'- -UGGGGcGGGGUggc-GGGG----------CGGGCCGu -5'
5108 3' -70.9 NC_001798.1 + 123766 0.66 0.315387
Target:  5'- gACCCCGCUgCugUGCaCCCuaGCCuuCGGCc -3'
miRNA:   3'- -UGGGGCGGgGugGCG-GGG--CGG--GCCGu -5'
5108 3' -70.9 NC_001798.1 + 101 0.66 0.315387
Target:  5'- aGCCCCgcgcGCCCCcuuccCCGUCCCuccCCCGGa- -3'
miRNA:   3'- -UGGGG----CGGGGu----GGCGGGGc--GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 126563 0.66 0.315387
Target:  5'- aACCCCGCCCU-CCGCUacaCGaCCCuGGa- -3'
miRNA:   3'- -UGGGGCGGGGuGGCGGg--GC-GGG-CCgu -5'
5108 3' -70.9 NC_001798.1 + 24270 0.66 0.315387
Target:  5'- uGCgCCGCgCCUACgCGCCCCuGC-UGGCGc -3'
miRNA:   3'- -UGgGGCG-GGGUG-GCGGGG-CGgGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.