miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 3' -70.9 NC_001798.1 + 84435 0.66 0.302483
Target:  5'- uCCCCacCCCCGCCGCgCaGCgUGGCGg -3'
miRNA:   3'- uGGGGc-GGGGUGGCGgGgCGgGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 91107 0.66 0.302483
Target:  5'- gACCCCGgUgCGCUGCUCCGCgggGGCGu -3'
miRNA:   3'- -UGGGGCgGgGUGGCGGGGCGgg-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 85871 0.66 0.299952
Target:  5'- cACCaCCGCCCUgaugaacuggaaggACUGCgCCCGCCUGcucgacuGCAc -3'
miRNA:   3'- -UGG-GGCGGGG--------------UGGCG-GGGCGGGC-------CGU- -5'
5108 3' -70.9 NC_001798.1 + 3233 0.66 0.298692
Target:  5'- cGCCCCagggcggcgagcacCCCCGCgGCgCCGUagCCGGCGg -3'
miRNA:   3'- -UGGGGc-------------GGGGUGgCGgGGCG--GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 92137 0.66 0.296186
Target:  5'- gGCCUC-CCCCGuCUGCCCCcggucgucuuGCCgGGCc -3'
miRNA:   3'- -UGGGGcGGGGU-GGCGGGG----------CGGgCCGu -5'
5108 3' -70.9 NC_001798.1 + 29506 0.66 0.296186
Target:  5'- cGCCCCGagagggggggauUCCCucccuCCGcCCCCGCCgGgGCGc -3'
miRNA:   3'- -UGGGGC------------GGGGu----GGC-GGGGCGGgC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 142690 0.66 0.293075
Target:  5'- cACCCCGCCCgcuugcauauucccUugCGCgcggcgacggcaCCGCCgGGCGa -3'
miRNA:   3'- -UGGGGCGGG--------------GugGCGg-----------GGCGGgCCGU- -5'
5108 3' -70.9 NC_001798.1 + 59614 0.66 0.28999
Target:  5'- gGCCgCCGuCCCCACCacccuCCgCCGCCuCGGg- -3'
miRNA:   3'- -UGG-GGC-GGGGUGGc----GG-GGCGG-GCCgu -5'
5108 3' -70.9 NC_001798.1 + 146004 0.66 0.28999
Target:  5'- gACCaCCGCCgCCACC-CCCCaaacaGCCaaGGCGc -3'
miRNA:   3'- -UGG-GGCGG-GGUGGcGGGG-----CGGg-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 75333 0.66 0.28999
Target:  5'- cACCaucaaCGCCCUGCgGUCgCCGuaCCCGGCGc -3'
miRNA:   3'- -UGGg----GCGGGGUGgCGG-GGC--GGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 75795 0.66 0.28999
Target:  5'- cACCCUGuucgcCCCCGCCaCCCCGacgcaCCCGGa- -3'
miRNA:   3'- -UGGGGC-----GGGGUGGcGGGGC-----GGGCCgu -5'
5108 3' -70.9 NC_001798.1 + 81705 0.66 0.28999
Target:  5'- uGCCgCCGCUuucuCCGCCGCCgugCCGCgCGuGCGc -3'
miRNA:   3'- -UGG-GGCGG----GGUGGCGG---GGCGgGC-CGU- -5'
5108 3' -70.9 NC_001798.1 + 108679 0.66 0.28999
Target:  5'- cGCgCCGCCCCcgggGCCGCCCgCGgggacaCCgaGGCAu -3'
miRNA:   3'- -UGgGGCGGGG----UGGCGGG-GC------GGg-CCGU- -5'
5108 3' -70.9 NC_001798.1 + 137370 0.66 0.28999
Target:  5'- aGCCCUGgUCCGgCGCaCCC-CUCGGCGu -3'
miRNA:   3'- -UGGGGCgGGGUgGCG-GGGcGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 124070 0.66 0.289376
Target:  5'- gACCCCccgggaggaggcgGCgCCugCGCCCCGa-CGGCc -3'
miRNA:   3'- -UGGGG-------------CGgGGugGCGGGGCggGCCGu -5'
5108 3' -70.9 NC_001798.1 + 134153 0.66 0.289376
Target:  5'- uCUCgGCCCCcggggccgucgcgGCCGCCCgCGCCgcgaCGGCc -3'
miRNA:   3'- uGGGgCGGGG-------------UGGCGGG-GCGG----GCCGu -5'
5108 3' -70.9 NC_001798.1 + 86092 0.66 0.283896
Target:  5'- gGCCCCGgCUgcgCGCCGCCgcggaCGCCCGccGCGc -3'
miRNA:   3'- -UGGGGCgGG---GUGGCGGg----GCGGGC--CGU- -5'
5108 3' -70.9 NC_001798.1 + 117556 0.66 0.283896
Target:  5'- gGCUgCGCCCagguGCCGCggCGCgCCGGCAu -3'
miRNA:   3'- -UGGgGCGGGg---UGGCGggGCG-GGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 118517 0.66 0.283896
Target:  5'- cUCCCGCaCCC-CCGCguUCCggugucucgcgGCCCGGCGc -3'
miRNA:   3'- uGGGGCG-GGGuGGCG--GGG-----------CGGGCCGU- -5'
5108 3' -70.9 NC_001798.1 + 66658 0.66 0.283896
Target:  5'- --aCCGCgCCACCGCCuCCGCguucuCgGGCGu -3'
miRNA:   3'- uggGGCGgGGUGGCGG-GGCG-----GgCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.