miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 78287 0.67 0.864213
Target:  5'- uGGCgGCCGcCGCGGAGCAgauaucCGCGGccCGGAa -3'
miRNA:   3'- -CCG-CGGC-GCGUCUUGU------GUGUCu-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 25044 0.67 0.864213
Target:  5'- cGCGCCGCGgGaGGCGCGCAaGCGc- -3'
miRNA:   3'- cCGCGGCGCgUcUUGUGUGUcUGCuu -5'
5108 5' -56.2 NC_001798.1 + 1411 0.67 0.863455
Target:  5'- aGCGgCGCGCccAGGccccagcGCGCGCAGGCGc- -3'
miRNA:   3'- cCGCgGCGCG--UCU-------UGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 149730 0.67 0.856535
Target:  5'- cGGCccccGCgGCGCAGcAGCGCGgGGGcCGAGg -3'
miRNA:   3'- -CCG----CGgCGCGUC-UUGUGUgUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 103143 0.67 0.856535
Target:  5'- aGGCGCCGC-CcGAugGCGCACAGGg--- -3'
miRNA:   3'- -CCGCGGCGcGuCU--UGUGUGUCUgcuu -5'
5108 5' -56.2 NC_001798.1 + 77623 0.67 0.856535
Target:  5'- cGGCGCCaCGCGacgcCGCGCcGACGAAc -3'
miRNA:   3'- -CCGCGGcGCGUcuu-GUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 31575 0.67 0.856535
Target:  5'- cGCGCCGCGCGccccCGCGCGGcCGu- -3'
miRNA:   3'- cCGCGGCGCGUcuu-GUGUGUCuGCuu -5'
5108 5' -56.2 NC_001798.1 + 1663 0.67 0.848653
Target:  5'- aGGCGCgcgUGCGCGGccucCACGCGcGCGAAg -3'
miRNA:   3'- -CCGCG---GCGCGUCuu--GUGUGUcUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 71648 0.67 0.848653
Target:  5'- gGGCccgGCCGUGCcgacGGAACAC-CuGGCGAGc -3'
miRNA:   3'- -CCG---CGGCGCG----UCUUGUGuGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 86103 0.67 0.848653
Target:  5'- cGCGCCGcCGCGGAcgcccgccGCGcCGCGGucaGCGAGu -3'
miRNA:   3'- cCGCGGC-GCGUCU--------UGU-GUGUC---UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 134243 0.67 0.856535
Target:  5'- gGGCGCUguaugcguGCGUucuggcggcccuGGAGCGC-CAGACGGg -3'
miRNA:   3'- -CCGCGG--------CGCG------------UCUUGUGuGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 16177 0.67 0.856535
Target:  5'- cGGC-CCGCGgGGAccggggggACGCACGGGCc-- -3'
miRNA:   3'- -CCGcGGCGCgUCU--------UGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 24909 0.67 0.856535
Target:  5'- cGGCGCUGcCGCGGAGCccGCGCcuGCuGAGc -3'
miRNA:   3'- -CCGCGGC-GCGUCUUG--UGUGucUG-CUU- -5'
5108 5' -56.2 NC_001798.1 + 24460 0.68 0.806416
Target:  5'- cGGCGCCGCGgGGGugcucgccGCcCugGGGCGc- -3'
miRNA:   3'- -CCGCGGCGCgUCU--------UGuGugUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 128585 0.68 0.806416
Target:  5'- uGgGCCGCGCGGA---CGCGGGCGu- -3'
miRNA:   3'- cCgCGGCGCGUCUuguGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 3752 0.68 0.815214
Target:  5'- uGCGCCGCGUcgcccagcucGGGcgccCACACGGGCGc- -3'
miRNA:   3'- cCGCGGCGCG----------UCUu---GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 982 0.68 0.815214
Target:  5'- cGGCcaucGCCGCGUcuucuuaaAG-GCGCACAGACGc- -3'
miRNA:   3'- -CCG----CGGCGCG--------UCuUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 31347 0.68 0.815214
Target:  5'- gGGCG-CGCGCAG-GCGCGgcgggUGGGCGAAg -3'
miRNA:   3'- -CCGCgGCGCGUCuUGUGU-----GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 90682 0.68 0.815214
Target:  5'- cGGCGaCuCGCGCAGGGCcgccGC-CAGGCGc- -3'
miRNA:   3'- -CCGC-G-GCGCGUCUUG----UGuGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 2716 0.68 0.806416
Target:  5'- cGGUGUCGgccaGCAGGGgGCGCAGGCu-- -3'
miRNA:   3'- -CCGCGGCg---CGUCUUgUGUGUCUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.