miRNA display CGI


Results 101 - 120 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 23884 0.69 0.721134
Target:  5'- gGGCGCCcgagGCGgAGGAgGCGCGGGCc-- -3'
miRNA:   3'- -CCGCGG----CGCgUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 71101 0.69 0.720139
Target:  5'- cGGCGUgCGCGCccccgGGGACGCugauggcgcgcguGCGGACGGAc -3'
miRNA:   3'- -CCGCG-GCGCG-----UCUUGUG-------------UGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 46186 0.69 0.720139
Target:  5'- aGGCcucugguccgucgGCCGCGCGcAAUACGCGGAgGGAc -3'
miRNA:   3'- -CCG-------------CGGCGCGUcUUGUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 22322 0.69 0.720139
Target:  5'- gGGcCGCCGCcacggacGCGG-ACGCGCGGGCGu- -3'
miRNA:   3'- -CC-GCGGCG-------CGUCuUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 135738 0.69 0.750589
Target:  5'- aGGUuaUGCGCGacGCGCugAGACGAAu -3'
miRNA:   3'- -CCGcgGCGCGUcuUGUGugUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 150569 0.69 0.750589
Target:  5'- cGGgGCC-CGCGGGgcgGCGCGgAGACGGc -3'
miRNA:   3'- -CCgCGGcGCGUCU---UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 78569 0.69 0.769717
Target:  5'- aGGCgcugGCCGCGCGcGAGCGC-CGGGCc-- -3'
miRNA:   3'- -CCG----CGGCGCGU-CUUGUGuGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 64900 0.69 0.769717
Target:  5'- cGCGCCcCGC-GAACGCACAGcGCGu- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUC-UGCuu -5'
5108 5' -56.2 NC_001798.1 + 21956 0.69 0.769717
Target:  5'- gGGCGgaGCGCGGGAUgACGCGGGCc-- -3'
miRNA:   3'- -CCGCggCGCGUCUUG-UGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 1376 0.69 0.769717
Target:  5'- cGGCGUCGCGCcccAGcgcCACGUAGACGGg -3'
miRNA:   3'- -CCGCGGCGCG---UCuu-GUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 129294 0.69 0.769717
Target:  5'- aGGCaCCGCGCGG---GCGCGGAgGAGg -3'
miRNA:   3'- -CCGcGGCGCGUCuugUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 69498 0.69 0.769717
Target:  5'- gGGCGg-GCGCAGGACGCGcCGGAgCGGGg -3'
miRNA:   3'- -CCGCggCGCGUCUUGUGU-GUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 26306 0.69 0.76021
Target:  5'- cGCGCCGCuGCGGcccgucuacguGGCGCugGGGCGc- -3'
miRNA:   3'- cCGCGGCG-CGUC-----------UUGUGugUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 75539 0.69 0.76021
Target:  5'- uGGCGUccaCGCGCAuGAGcCugGCGGACGu- -3'
miRNA:   3'- -CCGCG---GCGCGU-CUU-GugUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 52499 0.69 0.76021
Target:  5'- cGCGCCgGCGCAgGGACgACGCGG-CGGc -3'
miRNA:   3'- cCGCGG-CGCGU-CUUG-UGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 26375 0.69 0.750589
Target:  5'- cGgGCCGCgGCGGGaguucuGCGCGCGGGCGc- -3'
miRNA:   3'- cCgCGGCG-CGUCU------UGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 3410 0.7 0.705125
Target:  5'- aGCGCCGCGUucucgcgcgccagcaGGGGCGCGUAGGCGc- -3'
miRNA:   3'- cCGCGGCGCG---------------UCUUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 53252 0.7 0.711149
Target:  5'- gGGCGUCcUGCGGcAGCGCGCcGACGAc -3'
miRNA:   3'- -CCGCGGcGCGUC-UUGUGUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 85197 0.7 0.711149
Target:  5'- cGUGCCGCcCGcGAGCGCGCucGACGAGg -3'
miRNA:   3'- cCGCGGCGcGU-CUUGUGUGu-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 22874 0.7 0.701097
Target:  5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3'
miRNA:   3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.