miRNA display CGI


Results 121 - 140 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 77787 0.7 0.680825
Target:  5'- uGCGCCGCcuGCAGGcGCugGCGGGCa-- -3'
miRNA:   3'- cCGCGGCG--CGUCU-UGugUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 153652 0.7 0.679807
Target:  5'- aGGCGuaccuucCCGCGCGGcGCGucCGCGGGCGGGg -3'
miRNA:   3'- -CCGC-------GGCGCGUCuUGU--GUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 135502 0.7 0.670624
Target:  5'- cGGaCGCCGCGCAcGGCGCGauccaGGACGc- -3'
miRNA:   3'- -CC-GCGGCGCGUcUUGUGUg----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 56790 0.7 0.670624
Target:  5'- uGGcCGCCGacggcCGCGGAGguCACGGugGAGa -3'
miRNA:   3'- -CC-GCGGC-----GCGUCUUguGUGUCugCUU- -5'
5108 5' -56.2 NC_001798.1 + 36612 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36570 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36528 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36490 0.7 0.690986
Target:  5'- gGGCGCCgGCGCG----ACGCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGUcuugUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 147095 0.7 0.690986
Target:  5'- cGGCGCCGCGCGuu-CGCGaaaGGcGCGAAa -3'
miRNA:   3'- -CCGCGGCGCGUcuuGUGUg--UC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 85197 0.7 0.711149
Target:  5'- cGUGCCGCcCGcGAGCGCGCucGACGAGg -3'
miRNA:   3'- cCGCGGCGcGU-CUUGUGUGu-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 53252 0.7 0.711149
Target:  5'- gGGCGUCcUGCGGcAGCGCGCcGACGAc -3'
miRNA:   3'- -CCGCGGcGCGUC-UUGUGUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 3410 0.7 0.705125
Target:  5'- aGCGCCGCGUucucgcgcgccagcaGGGGCGCGUAGGCGc- -3'
miRNA:   3'- cCGCGGCGCG---------------UCUUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 22874 0.7 0.701097
Target:  5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3'
miRNA:   3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5'
5108 5' -56.2 NC_001798.1 + 150631 0.7 0.701097
Target:  5'- uGgGCCGCGCGGGGCugucuCGCGGGgGGc -3'
miRNA:   3'- cCgCGGCGCGUCUUGu----GUGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 148420 0.7 0.701097
Target:  5'- gGGCGCCgGgGCGGGgguGgGCACGGGCGu- -3'
miRNA:   3'- -CCGCGG-CgCGUCU---UgUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 26437 0.7 0.701097
Target:  5'- uGGUGCUGCGCG--ACgACGCGGACGc- -3'
miRNA:   3'- -CCGCGGCGCGUcuUG-UGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 20355 0.7 0.701097
Target:  5'- uGGCGCUGCcggGCGGGuucggggcgGCACGCAGGaucCGAAa -3'
miRNA:   3'- -CCGCGGCG---CGUCU---------UGUGUGUCU---GCUU- -5'
5108 5' -56.2 NC_001798.1 + 2881 0.7 0.701097
Target:  5'- cGGC-CaCGCGCAGGucccCGCGCAGGCGc- -3'
miRNA:   3'- -CCGcG-GCGCGUCUu---GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 141480 0.7 0.698069
Target:  5'- cGGCucGCCGCGCGGGggGCugAuguccguggcccugCAGACGGAc -3'
miRNA:   3'- -CCG--CGGCGCGUCU--UGugU--------------GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 4214 0.7 0.660392
Target:  5'- cGGCGCUG-GCGGGG-GCGCGGGCGGc -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGUGUCUGCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.