Results 161 - 174 of 174 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 31998 | 0.73 | 0.498785 |
Target: 5'- cGGCGCCGCGCcGGGCcccggacucggACuCGGGCGAc -3' miRNA: 3'- -CCGCGGCGCGuCUUG-----------UGuGUCUGCUu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 4358 | 0.73 | 0.508496 |
Target: 5'- aGCGCCgGCGgGGGGCGCGCcGGCGGc -3' miRNA: 3'- cCGCGG-CGCgUCUUGUGUGuCUGCUu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 85256 | 0.73 | 0.528152 |
Target: 5'- cGCgGCCGCGCGGGGC-CGCGcGCGAGg -3' miRNA: 3'- cCG-CGGCGCGUCUUGuGUGUcUGCUU- -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 79115 | 0.74 | 0.489156 |
Target: 5'- gGGCGCCaaggGCGCcGAGCGCGCGGAgGc- -3' miRNA: 3'- -CCGCGG----CGCGuCUUGUGUGUCUgCuu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 42764 | 0.74 | 0.479616 |
Target: 5'- gGGCGgCGCGCGGGGCcgACAGGCGc- -3' miRNA: 3'- -CCGCgGCGCGUCUUGugUGUCUGCuu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 23505 | 0.74 | 0.458028 |
Target: 5'- aGCGCCGCagaccacgccgcggGCGGGACccucgGCGCGGACGAc -3' miRNA: 3'- cCGCGGCG--------------CGUCUUG-----UGUGUCUGCUu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 8886 | 0.75 | 0.389815 |
Target: 5'- gGGCGCUG-GCGGAGgGCGgAGGCGAAg -3' miRNA: 3'- -CCGCGGCgCGUCUUgUGUgUCUGCUU- -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 11876 | 0.75 | 0.398294 |
Target: 5'- cGCGCugccgacccauaCGCGCAGGACAUACAGACc-- -3' miRNA: 3'- cCGCG------------GCGCGUCUUGUGUGUCUGcuu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 96967 | 0.75 | 0.406891 |
Target: 5'- aGGCGCUgGCGCGGAcCGCGgCGGGCGGc -3' miRNA: 3'- -CCGCGG-CGCGUCUuGUGU-GUCUGCUu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 52738 | 0.75 | 0.424429 |
Target: 5'- cGCGCCGcCGCGGAACACGUGGACc-- -3' miRNA: 3'- cCGCGGC-GCGUCUUGUGUGUCUGcuu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 2937 | 0.76 | 0.381455 |
Target: 5'- cGCaGCuCGCGCAGccaGGCGCGCAGGCGGGg -3' miRNA: 3'- cCG-CG-GCGCGUC---UUGUGUGUCUGCUU- -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 47589 | 0.76 | 0.365097 |
Target: 5'- aGCGCCGCGCGGGACcCAC-GAgGAGc -3' miRNA: 3'- cCGCGGCGCGUCUUGuGUGuCUgCUU- -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 37195 | 0.78 | 0.284018 |
Target: 5'- aGGCGCCGCGCcGAACG-ACGGGCGc- -3' miRNA: 3'- -CCGCGGCGCGuCUUGUgUGUCUGCuu -5' |
|||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 145657 | 1.08 | 0.002971 |
Target: 5'- cGGCGCCGCGCAGAACACACAGACGAAc -3' miRNA: 3'- -CCGCGGCGCGUCUUGUGUGUCUGCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home