Results 121 - 140 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 71413 | 0.67 | 0.8323 |
Target: 5'- gGGUGcCCGCGCGGAcgccccccgGC-CACGGGCu-- -3' miRNA: 3'- -CCGC-GGCGCGUCU---------UGuGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 29819 | 0.67 | 0.8323 |
Target: 5'- cGGcCGCCGCgGCAGAcccccgGCACGgugagaGGGCGAc -3' miRNA: 3'- -CC-GCGGCG-CGUCU------UGUGUg-----UCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153059 | 0.67 | 0.8323 |
Target: 5'- cGGCGCCGCcCccuGGGGCGgGCGGAgCGGc -3' miRNA: 3'- -CCGCGGCGcG---UCUUGUgUGUCU-GCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 30772 | 0.67 | 0.8323 |
Target: 5'- aGGCgGCCGUGCGGGccgGCACgGCcGugGAc -3' miRNA: 3'- -CCG-CGGCGCGUCU---UGUG-UGuCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 24695 | 0.67 | 0.8323 |
Target: 5'- cGGCccGCCGCGCccccgcgcccGGGGCcCGCGGGCGc- -3' miRNA: 3'- -CCG--CGGCGCG----------UCUUGuGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 115141 | 0.67 | 0.831463 |
Target: 5'- cGCGCgugCGCGCGGAucuggugGC-CAUAGGCGAc -3' miRNA: 3'- cCGCG---GCGCGUCU-------UGuGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 113642 | 0.67 | 0.823845 |
Target: 5'- cGGCGCCGCcauGUGGGugGCGgcGGCGGAc -3' miRNA: 3'- -CCGCGGCG---CGUCUugUGUguCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 2773 | 0.67 | 0.840572 |
Target: 5'- cGGCGgCG-GCGGAGCucaGCAGGCGc- -3' miRNA: 3'- -CCGCgGCgCGUCUUGug-UGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 126032 | 0.67 | 0.823845 |
Target: 5'- cGCGCUuagcgaGCGCcuGGACGCGgCGGACGAu -3' miRNA: 3'- cCGCGG------CGCGu-CUUGUGU-GUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 71648 | 0.67 | 0.848653 |
Target: 5'- gGGCccgGCCGUGCcgacGGAACAC-CuGGCGAGc -3' miRNA: 3'- -CCG---CGGCGCG----UCUUGUGuGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 97713 | 0.67 | 0.840572 |
Target: 5'- gGGCGCUGCGUgcgcGAGCAgCGCGGGgagcuCGAGa -3' miRNA: 3'- -CCGCGGCGCGu---CUUGU-GUGUCU-----GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 79501 | 0.67 | 0.82299 |
Target: 5'- uGCGCCGC-CGGGgcgaggcguaucuGCGCGCcGGCGGAg -3' miRNA: 3'- cCGCGGCGcGUCU-------------UGUGUGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 58991 | 0.67 | 0.823845 |
Target: 5'- gGGCGaaCGCGgGGGGgGCGCGGAgGAAc -3' miRNA: 3'- -CCGCg-GCGCgUCUUgUGUGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 146832 | 0.67 | 0.840572 |
Target: 5'- gGGCGCgGCaGCAacGAACGCAgGGGCc-- -3' miRNA: 3'- -CCGCGgCG-CGU--CUUGUGUgUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 139435 | 0.66 | 0.899336 |
Target: 5'- -cCGCCGUGCGGuu--CAgGGACGAGg -3' miRNA: 3'- ccGCGGCGCGUCuuguGUgUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 44911 | 0.66 | 0.892763 |
Target: 5'- gGGUGCUGUGCgguuggGGAACGCGCcccGAgGAAc -3' miRNA: 3'- -CCGCGGCGCG------UCUUGUGUGu--CUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 30552 | 0.66 | 0.892763 |
Target: 5'- uGUGCCGUGU-----GCACGGACGAGa -3' miRNA: 3'- cCGCGGCGCGucuugUGUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 43972 | 0.66 | 0.883875 |
Target: 5'- gGGCGUgggucgugggggauUGCGUAGGuCGCGCAGAUGu- -3' miRNA: 3'- -CCGCG--------------GCGCGUCUuGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 139712 | 0.66 | 0.88177 |
Target: 5'- gGGCGCCaccgaaucgcgGCGCAGAACAuguacguuaagcucuCGgGGGCGu- -3' miRNA: 3'- -CCGCGG-----------CGCGUCUUGU---------------GUgUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 88833 | 0.66 | 0.878931 |
Target: 5'- cGCGUCGCGaGGAGCAucuCGCGGcCGAu -3' miRNA: 3'- cCGCGGCGCgUCUUGU---GUGUCuGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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