Results 81 - 100 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 17238 | 0.68 | 0.778167 |
Target: 5'- cGGgGUCGCGCGGGgccgagaacaaggACGCGguGugGAc -3' miRNA: 3'- -CCgCGGCGCGUCU-------------UGUGUguCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 56716 | 0.68 | 0.779099 |
Target: 5'- uGGCGuuGCGCcgagAGAACgACACGGagucGCGGu -3' miRNA: 3'- -CCGCggCGCG----UCUUG-UGUGUC----UGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 97545 | 0.68 | 0.779099 |
Target: 5'- aGGCGUgGCGCgGGGACGCccGCGaGCGAGg -3' miRNA: 3'- -CCGCGgCGCG-UCUUGUG--UGUcUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150465 | 0.68 | 0.779099 |
Target: 5'- --gGCCGCGCgGGGGCGCGCGgcgcgccccGACGAc -3' miRNA: 3'- ccgCGGCGCG-UCUUGUGUGU---------CUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 35327 | 0.68 | 0.779099 |
Target: 5'- cGGCGCCcgcaacCGCAGAGCACucaGCuGGCGc- -3' miRNA: 3'- -CCGCGGc-----GCGUCUUGUG---UGuCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 98919 | 0.68 | 0.779099 |
Target: 5'- cGCGCCcggagGgGCAGAACuACACGGAgGGc -3' miRNA: 3'- cCGCGG-----CgCGUCUUG-UGUGUCUgCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 2278 | 0.68 | 0.782816 |
Target: 5'- cGGCGCagCGCGCGGccagcgaggccagcGCGCGCGGGuCGAAc -3' miRNA: 3'- -CCGCG--GCGCGUCu-------------UGUGUGUCU-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 53300 | 0.68 | 0.78835 |
Target: 5'- cGGCGCCGauCGCAGcguccGGCugGCGGcGCGGc -3' miRNA: 3'- -CCGCGGC--GCGUC-----UUGugUGUC-UGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 147178 | 0.68 | 0.78835 |
Target: 5'- cGGCGCCGgGCGGAAgGCGucccccgcCcGGCGGu -3' miRNA: 3'- -CCGCGGCgCGUCUUgUGU--------GuCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 115025 | 0.68 | 0.78835 |
Target: 5'- gGGCaagGCCGUGCGGAGC-C-UGGACGAc -3' miRNA: 3'- -CCG---CGGCGCGUCUUGuGuGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 121543 | 0.68 | 0.796554 |
Target: 5'- cGGCGCUGCGCcuggcguGGGGCcCGUGGGCGAc -3' miRNA: 3'- -CCGCGGCGCG-------UCUUGuGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 18624 | 0.68 | 0.797458 |
Target: 5'- -cCGCCGUGCauAGGuccGCAgACAGGCGAGu -3' miRNA: 3'- ccGCGGCGCG--UCU---UGUgUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153474 | 0.68 | 0.805527 |
Target: 5'- uGGCGCaccugcaCGCGCGGcgagaAGCACACcugcGGGCGGGg -3' miRNA: 3'- -CCGCG-------GCGCGUC-----UUGUGUG----UCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 24460 | 0.68 | 0.806416 |
Target: 5'- cGGCGCCGCGgGGGugcucgccGCcCugGGGCGc- -3' miRNA: 3'- -CCGCGGCGCgUCU--------UGuGugUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 128585 | 0.68 | 0.806416 |
Target: 5'- uGgGCCGCGCGGA---CGCGGGCGu- -3' miRNA: 3'- cCgCGGCGCGUCUuguGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 2716 | 0.68 | 0.806416 |
Target: 5'- cGGUGUCGgccaGCAGGGgGCGCAGGCu-- -3' miRNA: 3'- -CCGCGGCg---CGUCUUgUGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 90682 | 0.68 | 0.815214 |
Target: 5'- cGGCGaCuCGCGCAGGGCcgccGC-CAGGCGc- -3' miRNA: 3'- -CCGC-G-GCGCGUCUUG----UGuGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 3752 | 0.68 | 0.815214 |
Target: 5'- uGCGCCGCGUcgcccagcucGGGcgccCACACGGGCGc- -3' miRNA: 3'- cCGCGGCGCG----------UCUu---GUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 31347 | 0.68 | 0.815214 |
Target: 5'- gGGCG-CGCGCAG-GCGCGgcgggUGGGCGAAg -3' miRNA: 3'- -CCGCgGCGCGUCuUGUGU-----GUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 982 | 0.68 | 0.815214 |
Target: 5'- cGGCcaucGCCGCGUcuucuuaaAG-GCGCACAGACGc- -3' miRNA: 3'- -CCG----CGGCGCG--------UCuUGUGUGUCUGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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