Results 101 - 120 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 42520 | 0.68 | 0.816085 |
Target: 5'- cGCGCagcccgaucuugucgGCGCAgGAACACAC-GACGGAg -3' miRNA: 3'- cCGCGg--------------CGCGU-CUUGUGUGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 79501 | 0.67 | 0.82299 |
Target: 5'- uGCGCCGC-CGGGgcgaggcguaucuGCGCGCcGGCGGAg -3' miRNA: 3'- cCGCGGCGcGUCU-------------UGUGUGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 28669 | 0.67 | 0.823845 |
Target: 5'- cGGCGCCGCGUGGcGGCgGCcgAGGCGGu -3' miRNA: 3'- -CCGCGGCGCGUC-UUG-UGugUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 113642 | 0.67 | 0.823845 |
Target: 5'- cGGCGCCGCcauGUGGGugGCGgcGGCGGAc -3' miRNA: 3'- -CCGCGGCG---CGUCUugUGUguCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 58991 | 0.67 | 0.823845 |
Target: 5'- gGGCGaaCGCGgGGGGgGCGCGGAgGAAc -3' miRNA: 3'- -CCGCg-GCGCgUCUUgUGUGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 126032 | 0.67 | 0.823845 |
Target: 5'- cGCGCUuagcgaGCGCcuGGACGCGgCGGACGAu -3' miRNA: 3'- cCGCGG------CGCGu-CUUGUGU-GUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 115141 | 0.67 | 0.831463 |
Target: 5'- cGCGCgugCGCGCGGAucuggugGC-CAUAGGCGAc -3' miRNA: 3'- cCGCG---GCGCGUCU-------UGuGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153059 | 0.67 | 0.8323 |
Target: 5'- cGGCGCCGCcCccuGGGGCGgGCGGAgCGGc -3' miRNA: 3'- -CCGCGGCGcG---UCUUGUgUGUCU-GCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 71413 | 0.67 | 0.8323 |
Target: 5'- gGGUGcCCGCGCGGAcgccccccgGC-CACGGGCu-- -3' miRNA: 3'- -CCGC-GGCGCGUCU---------UGuGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 29819 | 0.67 | 0.8323 |
Target: 5'- cGGcCGCCGCgGCAGAcccccgGCACGgugagaGGGCGAc -3' miRNA: 3'- -CC-GCGGCG-CGUCU------UGUGUg-----UCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 30772 | 0.67 | 0.8323 |
Target: 5'- aGGCgGCCGUGCGGGccgGCACgGCcGugGAc -3' miRNA: 3'- -CCG-CGGCGCGUCU---UGUG-UGuCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 24695 | 0.67 | 0.8323 |
Target: 5'- cGGCccGCCGCGCccccgcgcccGGGGCcCGCGGGCGc- -3' miRNA: 3'- -CCG--CGGCGCG----------UCUUGuGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 146832 | 0.67 | 0.840572 |
Target: 5'- gGGCGCgGCaGCAacGAACGCAgGGGCc-- -3' miRNA: 3'- -CCGCGgCG-CGU--CUUGUGUgUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 96022 | 0.67 | 0.840572 |
Target: 5'- cGGCacaCCG-GCGGGGCGgGCGGGCGGg -3' miRNA: 3'- -CCGc--GGCgCGUCUUGUgUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 2773 | 0.67 | 0.840572 |
Target: 5'- cGGCGgCG-GCGGAGCucaGCAGGCGc- -3' miRNA: 3'- -CCGCgGCgCGUCUUGug-UGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 94990 | 0.67 | 0.840572 |
Target: 5'- cGGCgGCCGCcugggccccGCAGGGCGgCGCGGGCc-- -3' miRNA: 3'- -CCG-CGGCG---------CGUCUUGU-GUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 97713 | 0.67 | 0.840572 |
Target: 5'- gGGCGCUGCGUgcgcGAGCAgCGCGGGgagcuCGAGa -3' miRNA: 3'- -CCGCGGCGCGu---CUUGU-GUGUCU-----GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 106242 | 0.67 | 0.843828 |
Target: 5'- -aCGCUGCGCgacaaacaccaaaauAGGACACAggUAGACGAc -3' miRNA: 3'- ccGCGGCGCG---------------UCUUGUGU--GUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 26739 | 0.67 | 0.847853 |
Target: 5'- uGGcCGCgCGCGUgugugagaaauaaAGAACGagACAGACGAAa -3' miRNA: 3'- -CC-GCG-GCGCG-------------UCUUGUg-UGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1663 | 0.67 | 0.848653 |
Target: 5'- aGGCGCgcgUGCGCGGccucCACGCGcGCGAAg -3' miRNA: 3'- -CCGCG---GCGCGUCuu--GUGUGUcUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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