Results 121 - 140 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 1663 | 0.67 | 0.848653 |
Target: 5'- aGGCGCgcgUGCGCGGccucCACGCGcGCGAAg -3' miRNA: 3'- -CCGCG---GCGCGUCuu--GUGUGUcUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 86103 | 0.67 | 0.848653 |
Target: 5'- cGCGCCGcCGCGGAcgcccgccGCGcCGCGGucaGCGAGu -3' miRNA: 3'- cCGCGGC-GCGUCU--------UGU-GUGUC---UGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 134243 | 0.67 | 0.856535 |
Target: 5'- gGGCGCUguaugcguGCGUucuggcggcccuGGAGCGC-CAGACGGg -3' miRNA: 3'- -CCGCGG--------CGCG------------UCUUGUGuGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 149730 | 0.67 | 0.856535 |
Target: 5'- cGGCccccGCgGCGCAGcAGCGCGgGGGcCGAGg -3' miRNA: 3'- -CCG----CGgCGCGUC-UUGUGUgUCU-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 103143 | 0.67 | 0.856535 |
Target: 5'- aGGCGCCGC-CcGAugGCGCACAGGg--- -3' miRNA: 3'- -CCGCGGCGcGuCU--UGUGUGUCUgcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 77623 | 0.67 | 0.856535 |
Target: 5'- cGGCGCCaCGCGacgcCGCGCcGACGAAc -3' miRNA: 3'- -CCGCGGcGCGUcuu-GUGUGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 31575 | 0.67 | 0.856535 |
Target: 5'- cGCGCCGCGCGccccCGCGCGGcCGu- -3' miRNA: 3'- cCGCGGCGCGUcuu-GUGUGUCuGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 24909 | 0.67 | 0.856535 |
Target: 5'- cGGCGCUGcCGCGGAGCccGCGCcuGCuGAGc -3' miRNA: 3'- -CCGCGGC-GCGUCUUG--UGUGucUG-CUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 16177 | 0.67 | 0.856535 |
Target: 5'- cGGC-CCGCGgGGAccggggggACGCACGGGCc-- -3' miRNA: 3'- -CCGcGGCGCgUCU--------UGUGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1411 | 0.67 | 0.863455 |
Target: 5'- aGCGgCGCGCccAGGccccagcGCGCGCAGGCGc- -3' miRNA: 3'- cCGCgGCGCG--UCU-------UGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 78287 | 0.67 | 0.864213 |
Target: 5'- uGGCgGCCGcCGCGGAGCAgauaucCGCGGccCGGAa -3' miRNA: 3'- -CCG-CGGC-GCGUCUUGU------GUGUCu-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 120407 | 0.67 | 0.864213 |
Target: 5'- gGGgGCCGauccCGU-GAGCGCGCGGAgGAAa -3' miRNA: 3'- -CCgCGGC----GCGuCUUGUGUGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 78888 | 0.67 | 0.864213 |
Target: 5'- cGGCGCCGCGUc-GACGC-CcuGCGGAg -3' miRNA: 3'- -CCGCGGCGCGucUUGUGuGucUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 25044 | 0.67 | 0.864213 |
Target: 5'- cGCGCCGCGgGaGGCGCGCAaGCGc- -3' miRNA: 3'- cCGCGGCGCgUcUUGUGUGUcUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 30829 | 0.66 | 0.869463 |
Target: 5'- cGGCcCCGCGCucccugucgcugggGGGACACACGGuccGCGc- -3' miRNA: 3'- -CCGcGGCGCG--------------UCUUGUGUGUC---UGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 85987 | 0.66 | 0.871681 |
Target: 5'- aGGcCGCCGC-CGGGGCgcugGCGCAGGgGGGu -3' miRNA: 3'- -CC-GCGGCGcGUCUUG----UGUGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 117577 | 0.66 | 0.871681 |
Target: 5'- cGCGCCG-GCAuGGAC-CACGGGCa-- -3' miRNA: 3'- cCGCGGCgCGU-CUUGuGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 60976 | 0.66 | 0.876779 |
Target: 5'- aGGCGCgGCcguuugugucgcagGCGGAGgGgGCGGAUGAc -3' miRNA: 3'- -CCGCGgCG--------------CGUCUUgUgUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 31762 | 0.66 | 0.878931 |
Target: 5'- uGgGCCGgGCAGGcgcgaccgacGCGCGCGGGuCGGGa -3' miRNA: 3'- cCgCGGCgCGUCU----------UGUGUGUCU-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150096 | 0.66 | 0.878931 |
Target: 5'- gGGCGa-GCGCGGGGCG-GCGGAgGAAg -3' miRNA: 3'- -CCGCggCGCGUCUUGUgUGUCUgCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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