miRNA display CGI


Results 141 - 160 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 88833 0.66 0.878931
Target:  5'- cGCGUCGCGaGGAGCAucuCGCGGcCGAu -3'
miRNA:   3'- cCGCGGCGCgUCUUGU---GUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 83530 0.66 0.878931
Target:  5'- aGC-CCGCGCAugccGAGCGCcCGGACGu- -3'
miRNA:   3'- cCGcGGCGCGU----CUUGUGuGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 34590 0.66 0.878931
Target:  5'- cGGCGCgGCGUcucgguGGGACGCGggcaaaGGGCGGc -3'
miRNA:   3'- -CCGCGgCGCG------UCUUGUGUg-----UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 13243 0.66 0.878931
Target:  5'- cGGgGCUGCGUucGGAugGgGCAGACc-- -3'
miRNA:   3'- -CCgCGGCGCG--UCUugUgUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 31762 0.66 0.878931
Target:  5'- uGgGCCGgGCAGGcgcgaccgacGCGCGCGGGuCGGGa -3'
miRNA:   3'- cCgCGGCgCGUCU----------UGUGUGUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 139712 0.66 0.88177
Target:  5'- gGGCGCCaccgaaucgcgGCGCAGAACAuguacguuaagcucuCGgGGGCGu- -3'
miRNA:   3'- -CCGCGG-----------CGCGUCUUGU---------------GUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 43972 0.66 0.883875
Target:  5'- gGGCGUgggucgugggggauUGCGUAGGuCGCGCAGAUGu- -3'
miRNA:   3'- -CCGCG--------------GCGCGUCUuGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 44210 0.66 0.885268
Target:  5'- uGGUgagGCCGCGCugccccaGGGACAUGCGcccGACGAc -3'
miRNA:   3'- -CCG---CGGCGCG-------UCUUGUGUGU---CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 68114 0.66 0.88596
Target:  5'- cGGgGCCGCGCAcGGC-CA-AGACGGc -3'
miRNA:   3'- -CCgCGGCGCGUcUUGuGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 28796 0.66 0.88596
Target:  5'- cGGCGgCGCGCGGGuccuccgccGC-CGCGGGCc-- -3'
miRNA:   3'- -CCGCgGCGCGUCU---------UGuGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 89677 0.66 0.88596
Target:  5'- cGCGCUGCGCGGGcC-CGgAGGCGu- -3'
miRNA:   3'- cCGCGGCGCGUCUuGuGUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 82366 0.66 0.88596
Target:  5'- -cCGCCGCGCGGA-CGCGCAucCGc- -3'
miRNA:   3'- ccGCGGCGCGUCUuGUGUGUcuGCuu -5'
5108 5' -56.2 NC_001798.1 + 42214 0.66 0.88596
Target:  5'- aGCGCCGCGgguCGGcgUGCGCGgcGACGAAc -3'
miRNA:   3'- cCGCGGCGC---GUCuuGUGUGU--CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 26233 0.66 0.88596
Target:  5'- uGGCGCCcggcGCGCcGGACuucuGCGaGGACGAGg -3'
miRNA:   3'- -CCGCGG----CGCGuCUUG----UGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 3258 0.66 0.88596
Target:  5'- cGGCGCCGUagccgGCGGGcaccGCGCGCucgucggccGGCGAc -3'
miRNA:   3'- -CCGCGGCG-----CGUCU----UGUGUGu--------CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 142114 0.66 0.88596
Target:  5'- gGGCGUCGCuaAcGAGCGCGCugccGGACGc- -3'
miRNA:   3'- -CCGCGGCGcgU-CUUGUGUG----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 47041 0.66 0.891421
Target:  5'- aGGCGCaCGCgGCguuaucgGGGACGCGCaaugccgGGGCGAc -3'
miRNA:   3'- -CCGCG-GCG-CG-------UCUUGUGUG-------UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 2664 0.66 0.892093
Target:  5'- cGCGCCucccgcgGCGCGGAgGCGgGCGcGGCGAGc -3'
miRNA:   3'- cCGCGG-------CGCGUCU-UGUgUGU-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 30552 0.66 0.892763
Target:  5'- uGUGCCGUGU-----GCACGGACGAGa -3'
miRNA:   3'- cCGCGGCGCGucuugUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 44911 0.66 0.892763
Target:  5'- gGGUGCUGUGCgguuggGGAACGCGCcccGAgGAAc -3'
miRNA:   3'- -CCGCGGCGCG------UCUUGUGUGu--CUgCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.