Results 121 - 140 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 2881 | 0.7 | 0.701097 |
Target: 5'- cGGC-CaCGCGCAGGucccCGCGCAGGCGc- -3' miRNA: 3'- -CCGcG-GCGCGUCUu---GUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 20355 | 0.7 | 0.701097 |
Target: 5'- uGGCGCUGCcggGCGGGuucggggcgGCACGCAGGaucCGAAa -3' miRNA: 3'- -CCGCGGCG---CGUCU---------UGUGUGUCU---GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 26437 | 0.7 | 0.701097 |
Target: 5'- uGGUGCUGCGCG--ACgACGCGGACGc- -3' miRNA: 3'- -CCGCGGCGCGUcuUG-UGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 148420 | 0.7 | 0.701097 |
Target: 5'- gGGCGCCgGgGCGGGgguGgGCACGGGCGu- -3' miRNA: 3'- -CCGCGG-CgCGUCU---UgUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150631 | 0.7 | 0.701097 |
Target: 5'- uGgGCCGCGCGGGGCugucuCGCGGGgGGc -3' miRNA: 3'- cCgCGGCGCGUCUUGu----GUGUCUgCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 22874 | 0.7 | 0.701097 |
Target: 5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3' miRNA: 3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 141480 | 0.7 | 0.698069 |
Target: 5'- cGGCucGCCGCGCGGGggGCugAuguccguggcccugCAGACGGAc -3' miRNA: 3'- -CCG--CGGCGCGUCU--UGugU--------------GUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 29403 | 0.7 | 0.690986 |
Target: 5'- cGCGCCG-GCGGGGCGC-CGGGgGGAc -3' miRNA: 3'- cCGCGGCgCGUCUUGUGuGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 55979 | 0.7 | 0.690986 |
Target: 5'- cGCGCCGgGgAGGcCGCGgGGGCGAGg -3' miRNA: 3'- cCGCGGCgCgUCUuGUGUgUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 149982 | 0.7 | 0.690986 |
Target: 5'- gGGCGCgGCGCccgcGGACGCcgGGGCGAGc -3' miRNA: 3'- -CCGCGgCGCGu---CUUGUGugUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 36490 | 0.7 | 0.690986 |
Target: 5'- gGGCGCCgGCGCG----ACGCGGGCGGc -3' miRNA: 3'- -CCGCGG-CGCGUcuugUGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 147095 | 0.7 | 0.690986 |
Target: 5'- cGGCGCCGCGCGuu-CGCGaaaGGcGCGAAa -3' miRNA: 3'- -CCGCGGCGCGUcuuGUGUg--UC-UGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 77787 | 0.7 | 0.680825 |
Target: 5'- uGCGCCGCcuGCAGGcGCugGCGGGCa-- -3' miRNA: 3'- cCGCGGCG--CGUCU-UGugUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153032 | 0.7 | 0.680825 |
Target: 5'- gGGC-CCGCGCGGcGGCGCGCGGuuGGc -3' miRNA: 3'- -CCGcGGCGCGUC-UUGUGUGUCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153652 | 0.7 | 0.679807 |
Target: 5'- aGGCGuaccuucCCGCGCGGcGCGucCGCGGGCGGGg -3' miRNA: 3'- -CCGC-------GGCGCGUCuUGU--GUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 135502 | 0.7 | 0.670624 |
Target: 5'- cGGaCGCCGCGCAcGGCGCGauccaGGACGc- -3' miRNA: 3'- -CC-GCGGCGCGUcUUGUGUg----UCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 56790 | 0.7 | 0.670624 |
Target: 5'- uGGcCGCCGacggcCGCGGAGguCACGGugGAGa -3' miRNA: 3'- -CC-GCGGC-----GCGUCUUguGUGUCugCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 36570 | 0.7 | 0.660392 |
Target: 5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3' miRNA: 3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 36528 | 0.7 | 0.660392 |
Target: 5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3' miRNA: 3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4214 | 0.7 | 0.660392 |
Target: 5'- cGGCGCUG-GCGGGG-GCGCGGGCGGc -3' miRNA: 3'- -CCGCGGCgCGUCUUgUGUGUCUGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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