miRNA display CGI


Results 101 - 120 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 76534 0.72 0.558137
Target:  5'- cGGCGCuCGCGCAGcAGCugGaCAG-CGAc -3'
miRNA:   3'- -CCGCG-GCGCGUC-UUGugU-GUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 77623 0.67 0.856535
Target:  5'- cGGCGCCaCGCGacgcCGCGCcGACGAAc -3'
miRNA:   3'- -CCGCGGcGCGUcuu-GUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 77787 0.7 0.680825
Target:  5'- uGCGCCGCcuGCAGGcGCugGCGGGCa-- -3'
miRNA:   3'- cCGCGGCG--CGUCU-UGugUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 78287 0.67 0.864213
Target:  5'- uGGCgGCCGcCGCGGAGCAgauaucCGCGGccCGGAa -3'
miRNA:   3'- -CCG-CGGC-GCGUCUUGU------GUGUCu-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 78569 0.69 0.769717
Target:  5'- aGGCgcugGCCGCGCGcGAGCGC-CGGGCc-- -3'
miRNA:   3'- -CCG----CGGCGCGU-CUUGUGuGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 78888 0.67 0.864213
Target:  5'- cGGCGCCGCGUc-GACGC-CcuGCGGAg -3'
miRNA:   3'- -CCGCGGCGCGucUUGUGuGucUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 79115 0.74 0.489156
Target:  5'- gGGCGCCaaggGCGCcGAGCGCGCGGAgGc- -3'
miRNA:   3'- -CCGCGG----CGCGuCUUGUGUGUCUgCuu -5'
5108 5' -56.2 NC_001798.1 + 79501 0.67 0.82299
Target:  5'- uGCGCCGC-CGGGgcgaggcguaucuGCGCGCcGGCGGAg -3'
miRNA:   3'- cCGCGGCGcGUCU-------------UGUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 82366 0.66 0.88596
Target:  5'- -cCGCCGCGCGGA-CGCGCAucCGc- -3'
miRNA:   3'- ccGCGGCGCGUCUuGUGUGUcuGCuu -5'
5108 5' -56.2 NC_001798.1 + 83530 0.66 0.878931
Target:  5'- aGC-CCGCGCAugccGAGCGCcCGGACGu- -3'
miRNA:   3'- cCGcGGCGCGU----CUUGUGuGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 85197 0.7 0.711149
Target:  5'- cGUGCCGCcCGcGAGCGCGCucGACGAGg -3'
miRNA:   3'- cCGCGGCGcGU-CUUGUGUGu-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 85256 0.73 0.528152
Target:  5'- cGCgGCCGCGCGGGGC-CGCGcGCGAGg -3'
miRNA:   3'- cCG-CGGCGCGUCUUGuGUGUcUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 85987 0.66 0.871681
Target:  5'- aGGcCGCCGC-CGGGGCgcugGCGCAGGgGGGu -3'
miRNA:   3'- -CC-GCGGCGcGUCUUG----UGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 86103 0.67 0.848653
Target:  5'- cGCGCCGcCGCGGAcgcccgccGCGcCGCGGucaGCGAGu -3'
miRNA:   3'- cCGCGGC-GCGUCU--------UGU-GUGUC---UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 86150 0.66 0.899336
Target:  5'- aGCGCaC-CGCGGGGCGCGCAugcGCGAc -3'
miRNA:   3'- cCGCG-GcGCGUCUUGUGUGUc--UGCUu -5'
5108 5' -56.2 NC_001798.1 + 88833 0.66 0.878931
Target:  5'- cGCGUCGCGaGGAGCAucuCGCGGcCGAu -3'
miRNA:   3'- cCGCGGCGCgUCUUGU---GUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 89677 0.66 0.88596
Target:  5'- cGCGCUGCGCGGGcC-CGgAGGCGu- -3'
miRNA:   3'- cCGCGGCGCGUCUuGuGUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 90682 0.68 0.815214
Target:  5'- cGGCGaCuCGCGCAGGGCcgccGC-CAGGCGc- -3'
miRNA:   3'- -CCGC-G-GCGCGUCUUG----UGuGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 94768 0.66 0.905674
Target:  5'- cGGCucuuGUCGCGCgAGGACAUAgAGACc-- -3'
miRNA:   3'- -CCG----CGGCGCG-UCUUGUGUgUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 94990 0.67 0.840572
Target:  5'- cGGCgGCCGCcugggccccGCAGGGCGgCGCGGGCc-- -3'
miRNA:   3'- -CCG-CGGCG---------CGUCUUGU-GUGUCUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.