miRNA display CGI


Results 121 - 140 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 96022 0.67 0.840572
Target:  5'- cGGCacaCCG-GCGGGGCGgGCGGGCGGg -3'
miRNA:   3'- -CCGc--GGCgCGUCUUGUgUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 96967 0.75 0.406891
Target:  5'- aGGCGCUgGCGCGGAcCGCGgCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGUCUuGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 97545 0.68 0.779099
Target:  5'- aGGCGUgGCGCgGGGACGCccGCGaGCGAGg -3'
miRNA:   3'- -CCGCGgCGCG-UCUUGUG--UGUcUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 97713 0.67 0.840572
Target:  5'- gGGCGCUGCGUgcgcGAGCAgCGCGGGgagcuCGAGa -3'
miRNA:   3'- -CCGCGGCGCGu---CUUGU-GUGUCU-----GCUU- -5'
5108 5' -56.2 NC_001798.1 + 98919 0.68 0.779099
Target:  5'- cGCGCCcggagGgGCAGAACuACACGGAgGGc -3'
miRNA:   3'- cCGCGG-----CgCGUCUUG-UGUGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 99971 0.66 0.892763
Target:  5'- aGGCGCCcaGCGCcaacgcguccguGGAGCGCAUcaAGACc-- -3'
miRNA:   3'- -CCGCGG--CGCG------------UCUUGUGUG--UCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 103143 0.67 0.856535
Target:  5'- aGGCGCCGC-CcGAugGCGCACAGGg--- -3'
miRNA:   3'- -CCGCGGCGcGuCU--UGUGUGUCUgcuu -5'
5108 5' -56.2 NC_001798.1 + 106242 0.67 0.843828
Target:  5'- -aCGCUGCGCgacaaacaccaaaauAGGACACAggUAGACGAc -3'
miRNA:   3'- ccGCGGCGCG---------------UCUUGUGU--GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 111555 0.66 0.878931
Target:  5'- cGGuCGCCgGCGUAGAACACccaccACAGcucccugaGCGGGg -3'
miRNA:   3'- -CC-GCGG-CGCGUCUUGUG-----UGUC--------UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 112188 0.66 0.898689
Target:  5'- cGgGCCGCacgucccGCAGGcCGCGCuGGCGGAg -3'
miRNA:   3'- cCgCGGCG-------CGUCUuGUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 113642 0.67 0.823845
Target:  5'- cGGCGCCGCcauGUGGGugGCGgcGGCGGAc -3'
miRNA:   3'- -CCGCGGCG---CGUCUugUGUguCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 115025 0.68 0.78835
Target:  5'- gGGCaagGCCGUGCGGAGC-C-UGGACGAc -3'
miRNA:   3'- -CCG---CGGCGCGUCUUGuGuGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 115141 0.67 0.831463
Target:  5'- cGCGCgugCGCGCGGAucuggugGC-CAUAGGCGAc -3'
miRNA:   3'- cCGCG---GCGCGUCU-------UGuGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 116421 0.69 0.740863
Target:  5'- aGGC-CCGCGCGGccGACGcCGCcGACGAc -3'
miRNA:   3'- -CCGcGGCGCGUC--UUGU-GUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 117577 0.66 0.871681
Target:  5'- cGCGCCG-GCAuGGAC-CACGGGCa-- -3'
miRNA:   3'- cCGCGGCgCGU-CUUGuGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 119232 0.72 0.588584
Target:  5'- cGGCuGCuCGCGCuGAGCGCccaGGACGGAu -3'
miRNA:   3'- -CCG-CG-GCGCGuCUUGUGug-UCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 120370 0.69 0.740863
Target:  5'- gGGCgagGCUGUGCAcGACGCAgCGGGCGAu -3'
miRNA:   3'- -CCG---CGGCGCGUcUUGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 120407 0.67 0.864213
Target:  5'- gGGgGCCGauccCGU-GAGCGCGCGGAgGAAa -3'
miRNA:   3'- -CCgCGGC----GCGuCUUGUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 121455 0.66 0.905674
Target:  5'- -cUGCCGCGCGuccccaGCGCGGGCGGg -3'
miRNA:   3'- ccGCGGCGCGUcuug--UGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 121543 0.68 0.796554
Target:  5'- cGGCGCUGCGCcuggcguGGGGCcCGUGGGCGAc -3'
miRNA:   3'- -CCGCGGCGCG-------UCUUGuGUGUCUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.