miRNA display CGI


Results 141 - 160 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 126032 0.67 0.823845
Target:  5'- cGCGCUuagcgaGCGCcuGGACGCGgCGGACGAu -3'
miRNA:   3'- cCGCGG------CGCGu-CUUGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 128585 0.68 0.806416
Target:  5'- uGgGCCGCGCGGA---CGCGGGCGu- -3'
miRNA:   3'- cCgCGGCGCGUCUuguGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 129294 0.69 0.769717
Target:  5'- aGGCaCCGCGCGG---GCGCGGAgGAGg -3'
miRNA:   3'- -CCGcGGCGCGUCuugUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 130418 0.66 0.905674
Target:  5'- cGGCGacgaGCGcCAGGGCgACGCGGACu-- -3'
miRNA:   3'- -CCGCgg--CGC-GUCUUG-UGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 132671 0.66 0.892763
Target:  5'- gGGCGCUGCgacGCGucGCACGCcGACGc- -3'
miRNA:   3'- -CCGCGGCG---CGUcuUGUGUGuCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 133565 0.69 0.740863
Target:  5'- gGGUGCaGCugGCcaAGAGCACGCAGACGu- -3'
miRNA:   3'- -CCGCGgCG--CG--UCUUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 133672 0.71 0.639867
Target:  5'- aGCGCC-UGCcGGACGCACAGACa-- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 134243 0.67 0.856535
Target:  5'- gGGCGCUguaugcguGCGUucuggcggcccuGGAGCGC-CAGACGGg -3'
miRNA:   3'- -CCGCGG--------CGCG------------UCUUGUGuGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 134312 0.7 0.711149
Target:  5'- uGCGCCuGgGCuGGGACcCGCAGACGGGu -3'
miRNA:   3'- cCGCGG-CgCG-UCUUGuGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 135502 0.7 0.670624
Target:  5'- cGGaCGCCGCGCAcGGCGCGauccaGGACGc- -3'
miRNA:   3'- -CC-GCGGCGCGUcUUGUGUg----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 135738 0.69 0.750589
Target:  5'- aGGUuaUGCGCGacGCGCugAGACGAAu -3'
miRNA:   3'- -CCGcgGCGCGUcuUGUGugUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 139435 0.66 0.899336
Target:  5'- -cCGCCGUGCGGuu--CAgGGACGAGg -3'
miRNA:   3'- ccGCGGCGCGUCuuguGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 139712 0.66 0.88177
Target:  5'- gGGCGCCaccgaaucgcgGCGCAGAACAuguacguuaagcucuCGgGGGCGu- -3'
miRNA:   3'- -CCGCGG-----------CGCGUCUUGU---------------GUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 141480 0.7 0.698069
Target:  5'- cGGCucGCCGCGCGGGggGCugAuguccguggcccugCAGACGGAc -3'
miRNA:   3'- -CCG--CGGCGCGUCU--UGugU--------------GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 142114 0.66 0.88596
Target:  5'- gGGCGUCGCuaAcGAGCGCGCugccGGACGc- -3'
miRNA:   3'- -CCGCGGCGcgU-CUUGUGUG----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 145657 1.08 0.002971
Target:  5'- cGGCGCCGCGCAGAACACACAGACGAAc -3'
miRNA:   3'- -CCGCGGCGCGUCUUGUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 146832 0.67 0.840572
Target:  5'- gGGCGCgGCaGCAacGAACGCAgGGGCc-- -3'
miRNA:   3'- -CCGCGgCG-CGU--CUUGUGUgUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 147095 0.7 0.690986
Target:  5'- cGGCGCCGCGCGuu-CGCGaaaGGcGCGAAa -3'
miRNA:   3'- -CCGCGGCGCGUcuuGUGUg--UC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 147178 0.68 0.78835
Target:  5'- cGGCGCCGgGCGGAAgGCGucccccgcCcGGCGGu -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGU--------GuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 147514 0.66 0.897388
Target:  5'- gGGCGCCuGCGUgugucucgugugagAGAGCGCGCcccuCGAAc -3'
miRNA:   3'- -CCGCGG-CGCG--------------UCUUGUGUGucu-GCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.