Results 161 - 174 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 148420 | 0.7 | 0.701097 |
Target: 5'- gGGCGCCgGgGCGGGgguGgGCACGGGCGu- -3' miRNA: 3'- -CCGCGG-CgCGUCU---UgUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 149730 | 0.67 | 0.856535 |
Target: 5'- cGGCccccGCgGCGCAGcAGCGCGgGGGcCGAGg -3' miRNA: 3'- -CCG----CGgCGCGUC-UUGUGUgUCU-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 149982 | 0.7 | 0.690986 |
Target: 5'- gGGCGCgGCGCccgcGGACGCcgGGGCGAGc -3' miRNA: 3'- -CCGCGgCGCGu---CUUGUGugUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150096 | 0.66 | 0.878931 |
Target: 5'- gGGCGa-GCGCGGGGCG-GCGGAgGAAg -3' miRNA: 3'- -CCGCggCGCGUCUUGUgUGUCUgCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150431 | 0.72 | 0.578394 |
Target: 5'- cGGCGCgGgGCGGAcuccggACGCGCGGgGCGAc -3' miRNA: 3'- -CCGCGgCgCGUCU------UGUGUGUC-UGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150465 | 0.68 | 0.779099 |
Target: 5'- --gGCCGCGCgGGGGCGCGCGgcgcgccccGACGAc -3' miRNA: 3'- ccgCGGCGCG-UCUUGUGUGU---------CUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150569 | 0.69 | 0.750589 |
Target: 5'- cGGgGCC-CGCGGGgcgGCGCGgAGACGGc -3' miRNA: 3'- -CCgCGGcGCGUCU---UGUGUgUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150631 | 0.7 | 0.701097 |
Target: 5'- uGgGCCGCGCGGGGCugucuCGCGGGgGGc -3' miRNA: 3'- cCgCGGCGCGUCUUGu----GUGUCUgCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 150811 | 0.71 | 0.654241 |
Target: 5'- gGGCGCCGCcgcugcugcugcuccGCGGGGCGC-CAGGgGGc -3' miRNA: 3'- -CCGCGGCG---------------CGUCUUGUGuGUCUgCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153032 | 0.7 | 0.680825 |
Target: 5'- gGGC-CCGCGCGGcGGCGCGCGGuuGGc -3' miRNA: 3'- -CCGcGGCGCGUC-UUGUGUGUCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153059 | 0.67 | 0.8323 |
Target: 5'- cGGCGCCGCcCccuGGGGCGgGCGGAgCGGc -3' miRNA: 3'- -CCGCGGCGcG---UCUUGUgUGUCU-GCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153094 | 0.66 | 0.905674 |
Target: 5'- cGGCGCCGggcccuCGCGGAuauAUACGCGGGg--- -3' miRNA: 3'- -CCGCGGC------GCGUCU---UGUGUGUCUgcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153474 | 0.68 | 0.805527 |
Target: 5'- uGGCGCaccugcaCGCGCGGcgagaAGCACACcugcGGGCGGGg -3' miRNA: 3'- -CCGCG-------GCGCGUC-----UUGUGUG----UCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 153652 | 0.7 | 0.679807 |
Target: 5'- aGGCGuaccuucCCGCGCGGcGCGucCGCGGGCGGGg -3' miRNA: 3'- -CCGC-------GGCGCGUCuUGU--GUGUCUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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