miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 70065 0.69 0.721134
Target:  5'- cGCGCCGCGUcgccGAGCGCGCAcGcCGGu -3'
miRNA:   3'- cCGCGGCGCGu---CUUGUGUGU-CuGCUu -5'
5108 5' -56.2 NC_001798.1 + 69498 0.69 0.769717
Target:  5'- gGGCGg-GCGCAGGACGCGcCGGAgCGGGg -3'
miRNA:   3'- -CCGCggCGCGUCUUGUGU-GUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 69008 0.66 0.893431
Target:  5'- cGGCGUCGCGCgcaucguaggcggcGGcGCACGCGGccaccagaaaguuaaACGAc -3'
miRNA:   3'- -CCGCGGCGCG--------------UCuUGUGUGUC---------------UGCUu -5'
5108 5' -56.2 NC_001798.1 + 68114 0.66 0.88596
Target:  5'- cGGgGCCGCGCAcGGC-CA-AGACGGc -3'
miRNA:   3'- -CCgCGGCGCGUcUUGuGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 64900 0.69 0.769717
Target:  5'- cGCGCCcCGC-GAACGCACAGcGCGu- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUC-UGCuu -5'
5108 5' -56.2 NC_001798.1 + 60976 0.66 0.876779
Target:  5'- aGGCGCgGCcguuugugucgcagGCGGAGgGgGCGGAUGAc -3'
miRNA:   3'- -CCGCGgCG--------------CGUCUUgUgUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 60216 0.66 0.905674
Target:  5'- gGGCGCUgGUGCuGGACGacgcgcccuccuCGCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGuCUUGU------------GUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 58991 0.67 0.823845
Target:  5'- gGGCGaaCGCGgGGGGgGCGCGGAgGAAc -3'
miRNA:   3'- -CCGCg-GCGCgUCUUgUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 58844 0.71 0.639867
Target:  5'- aGCGCCGCGUAGGcggccccgaGCGC-CAGGCa-- -3'
miRNA:   3'- cCGCGGCGCGUCU---------UGUGuGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 58390 0.69 0.749621
Target:  5'- cGGaGCCGCGuCAGAcccucgcGCgGCGCAGGCGGc -3'
miRNA:   3'- -CCgCGGCGC-GUCU-------UG-UGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 56790 0.7 0.670624
Target:  5'- uGGcCGCCGacggcCGCGGAGguCACGGugGAGa -3'
miRNA:   3'- -CC-GCGGC-----GCGUCUUguGUGUCugCUU- -5'
5108 5' -56.2 NC_001798.1 + 56716 0.68 0.779099
Target:  5'- uGGCGuuGCGCcgagAGAACgACACGGagucGCGGu -3'
miRNA:   3'- -CCGCggCGCG----UCUUG-UGUGUC----UGCUu -5'
5108 5' -56.2 NC_001798.1 + 55979 0.7 0.690986
Target:  5'- cGCGCCGgGgAGGcCGCGgGGGCGAGg -3'
miRNA:   3'- cCGCGGCgCgUCUuGUGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 53300 0.68 0.78835
Target:  5'- cGGCGCCGauCGCAGcguccGGCugGCGGcGCGGc -3'
miRNA:   3'- -CCGCGGC--GCGUC-----UUGugUGUC-UGCUu -5'
5108 5' -56.2 NC_001798.1 + 53252 0.7 0.711149
Target:  5'- gGGCGUCcUGCGGcAGCGCGCcGACGAc -3'
miRNA:   3'- -CCGCGGcGCGUC-UUGUGUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 52738 0.75 0.424429
Target:  5'- cGCGCCGcCGCGGAACACGUGGACc-- -3'
miRNA:   3'- cCGCGGC-GCGUCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 52499 0.69 0.76021
Target:  5'- cGCGCCgGCGCAgGGACgACGCGG-CGGc -3'
miRNA:   3'- cCGCGG-CGCGU-CUUG-UGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 47589 0.76 0.365097
Target:  5'- aGCGCCGCGCGGGACcCAC-GAgGAGc -3'
miRNA:   3'- cCGCGGCGCGUCUUGuGUGuCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 47041 0.66 0.891421
Target:  5'- aGGCGCaCGCgGCguuaucgGGGACGCGCaaugccgGGGCGAc -3'
miRNA:   3'- -CCGCG-GCG-CG-------UCUUGUGUG-------UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 46186 0.69 0.720139
Target:  5'- aGGCcucugguccgucgGCCGCGCGcAAUACGCGGAgGGAc -3'
miRNA:   3'- -CCG-------------CGGCGCGUcUUGUGUGUCUgCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.