Results 141 - 160 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 23884 | 0.69 | 0.721134 |
Target: 5'- gGGCGCCcgagGCGgAGGAgGCGCGGGCc-- -3' miRNA: 3'- -CCGCGG----CGCgUCUUgUGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 23505 | 0.74 | 0.458028 |
Target: 5'- aGCGCCGCagaccacgccgcggGCGGGACccucgGCGCGGACGAc -3' miRNA: 3'- cCGCGGCG--------------CGUCUUG-----UGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 22874 | 0.7 | 0.701097 |
Target: 5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3' miRNA: 3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 22322 | 0.69 | 0.720139 |
Target: 5'- gGGcCGCCGCcacggacGCGG-ACGCGCGGGCGu- -3' miRNA: 3'- -CC-GCGGCG-------CGUCuUGUGUGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 22267 | 0.71 | 0.608027 |
Target: 5'- cGCGCCGgGCgcuaaugAGAugcCGCGCGGGCGGAg -3' miRNA: 3'- cCGCGGCgCG-------UCUu--GUGUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 21956 | 0.69 | 0.769717 |
Target: 5'- gGGCGgaGCGCGGGAUgACGCGGGCc-- -3' miRNA: 3'- -CCGCggCGCGUCUUG-UGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 20355 | 0.7 | 0.701097 |
Target: 5'- uGGCGCUGCcggGCGGGuucggggcgGCACGCAGGaucCGAAa -3' miRNA: 3'- -CCGCGGCG---CGUCU---------UGUGUGUCU---GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 18624 | 0.68 | 0.797458 |
Target: 5'- -cCGCCGUGCauAGGuccGCAgACAGGCGAGu -3' miRNA: 3'- ccGCGGCGCG--UCU---UGUgUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 17238 | 0.68 | 0.778167 |
Target: 5'- cGGgGUCGCGCGGGgccgagaacaaggACGCGguGugGAc -3' miRNA: 3'- -CCgCGGCGCGUCU-------------UGUGUguCugCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 16177 | 0.67 | 0.856535 |
Target: 5'- cGGC-CCGCGgGGAccggggggACGCACGGGCc-- -3' miRNA: 3'- -CCGcGGCGCgUCU--------UGUGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 13243 | 0.66 | 0.878931 |
Target: 5'- cGGgGCUGCGUucGGAugGgGCAGACc-- -3' miRNA: 3'- -CCgCGGCGCG--UCUugUgUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 11948 | 0.72 | 0.56723 |
Target: 5'- cGGCuGCCGCGCcagacccagcuccAGGGCGgAUAGGCGGGg -3' miRNA: 3'- -CCG-CGGCGCG-------------UCUUGUgUGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 11876 | 0.75 | 0.398294 |
Target: 5'- cGCGCugccgacccauaCGCGCAGGACAUACAGACc-- -3' miRNA: 3'- cCGCG------------GCGCGUCUUGUGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 9652 | 0.72 | 0.598806 |
Target: 5'- aGGCGCagcgggccgCGCGCGGAGgGCGCGGgAUGGGg -3' miRNA: 3'- -CCGCG---------GCGCGUCUUgUGUGUC-UGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 8886 | 0.75 | 0.389815 |
Target: 5'- gGGCGCUG-GCGGAGgGCGgAGGCGAAg -3' miRNA: 3'- -CCGCGGCgCGUCUUgUGUgUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4358 | 0.73 | 0.508496 |
Target: 5'- aGCGCCgGCGgGGGGCGCGCcGGCGGc -3' miRNA: 3'- cCGCGG-CGCgUCUUGUGUGuCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4214 | 0.7 | 0.660392 |
Target: 5'- cGGCGCUG-GCGGGG-GCGCGGGCGGc -3' miRNA: 3'- -CCGCGGCgCGUCUUgUGUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4134 | 0.69 | 0.740863 |
Target: 5'- gGGCGCCGCcccCGGGGCccuCGCGGGCa-- -3' miRNA: 3'- -CCGCGGCGc--GUCUUGu--GUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 4037 | 0.71 | 0.64911 |
Target: 5'- cGGCcaccGCCGCGCGGGcccggcgGCGCucCAGGCGGc -3' miRNA: 3'- -CCG----CGGCGCGUCU-------UGUGu-GUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 3752 | 0.68 | 0.815214 |
Target: 5'- uGCGCCGCGUcgcccagcucGGGcgccCACACGGGCGc- -3' miRNA: 3'- cCGCGGCGCG----------UCUu---GUGUGUCUGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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