Results 161 - 174 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5108 | 5' | -56.2 | NC_001798.1 | + | 103143 | 0.67 | 0.856535 |
Target: 5'- aGGCGCCGC-CcGAugGCGCACAGGg--- -3' miRNA: 3'- -CCGCGGCGcGuCU--UGUGUGUCUgcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 149730 | 0.67 | 0.856535 |
Target: 5'- cGGCccccGCgGCGCAGcAGCGCGgGGGcCGAGg -3' miRNA: 3'- -CCG----CGgCGCGUC-UUGUGUgUCU-GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 71648 | 0.67 | 0.848653 |
Target: 5'- gGGCccgGCCGUGCcgacGGAACAC-CuGGCGAGc -3' miRNA: 3'- -CCG---CGGCGCG----UCUUGUGuGuCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1663 | 0.67 | 0.848653 |
Target: 5'- aGGCGCgcgUGCGCGGccucCACGCGcGCGAAg -3' miRNA: 3'- -CCGCG---GCGCGUCuu--GUGUGUcUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 26739 | 0.67 | 0.847853 |
Target: 5'- uGGcCGCgCGCGUgugugagaaauaaAGAACGagACAGACGAAa -3' miRNA: 3'- -CC-GCG-GCGCG-------------UCUUGUg-UGUCUGCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 29819 | 0.67 | 0.8323 |
Target: 5'- cGGcCGCCGCgGCAGAcccccgGCACGgugagaGGGCGAc -3' miRNA: 3'- -CC-GCGGCG-CGUCU------UGUGUg-----UCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 71413 | 0.67 | 0.8323 |
Target: 5'- gGGUGcCCGCGCGGAcgccccccgGC-CACGGGCu-- -3' miRNA: 3'- -CCGC-GGCGCGUCU---------UGuGUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 94990 | 0.67 | 0.840572 |
Target: 5'- cGGCgGCCGCcugggccccGCAGGGCGgCGCGGGCc-- -3' miRNA: 3'- -CCG-CGGCG---------CGUCUUGU-GUGUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 96022 | 0.67 | 0.840572 |
Target: 5'- cGGCacaCCG-GCGGGGCGgGCGGGCGGg -3' miRNA: 3'- -CCGc--GGCgCGUCUUGUgUGUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 2773 | 0.67 | 0.840572 |
Target: 5'- cGGCGgCG-GCGGAGCucaGCAGGCGc- -3' miRNA: 3'- -CCGCgGCgCGUCUUGug-UGUCUGCuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 97713 | 0.67 | 0.840572 |
Target: 5'- gGGCGCUGCGUgcgcGAGCAgCGCGGGgagcuCGAGa -3' miRNA: 3'- -CCGCGGCGCGu---CUUGU-GUGUCU-----GCUU- -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 146832 | 0.67 | 0.840572 |
Target: 5'- gGGCGCgGCaGCAacGAACGCAgGGGCc-- -3' miRNA: 3'- -CCGCGgCG-CGU--CUUGUGUgUCUGcuu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 106242 | 0.67 | 0.843828 |
Target: 5'- -aCGCUGCGCgacaaacaccaaaauAGGACACAggUAGACGAc -3' miRNA: 3'- ccGCGGCGCG---------------UCUUGUGU--GUCUGCUu -5' |
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5108 | 5' | -56.2 | NC_001798.1 | + | 1411 | 0.67 | 0.863455 |
Target: 5'- aGCGgCGCGCccAGGccccagcGCGCGCAGGCGc- -3' miRNA: 3'- cCGCgGCGCG--UCU-------UGUGUGUCUGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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