miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 982 0.68 0.815214
Target:  5'- cGGCcaucGCCGCGUcuucuuaaAG-GCGCACAGACGc- -3'
miRNA:   3'- -CCG----CGGCGCG--------UCuUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 1376 0.69 0.769717
Target:  5'- cGGCGUCGCGCcccAGcgcCACGUAGACGGg -3'
miRNA:   3'- -CCGCGGCGCG---UCuu-GUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 1411 0.67 0.863455
Target:  5'- aGCGgCGCGCccAGGccccagcGCGCGCAGGCGc- -3'
miRNA:   3'- cCGCgGCGCG--UCU-------UGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 1663 0.67 0.848653
Target:  5'- aGGCGCgcgUGCGCGGccucCACGCGcGCGAAg -3'
miRNA:   3'- -CCGCG---GCGCGUCuu--GUGUGUcUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 1730 0.66 0.905674
Target:  5'- cGGUGCgGCGCAGGuccCGCGCcGcCGGc -3'
miRNA:   3'- -CCGCGgCGCGUCUu--GUGUGuCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 2203 0.73 0.495887
Target:  5'- aGGcCGCCGCGCGGcgcagcgggcccgaGGCGCGCAG-CGGg -3'
miRNA:   3'- -CC-GCGGCGCGUC--------------UUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 2278 0.68 0.782816
Target:  5'- cGGCGCagCGCGCGGccagcgaggccagcGCGCGCGGGuCGAAc -3'
miRNA:   3'- -CCGCG--GCGCGUCu-------------UGUGUGUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 2664 0.66 0.892093
Target:  5'- cGCGCCucccgcgGCGCGGAgGCGgGCGcGGCGAGc -3'
miRNA:   3'- cCGCGG-------CGCGUCU-UGUgUGU-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 2716 0.68 0.806416
Target:  5'- cGGUGUCGgccaGCAGGGgGCGCAGGCu-- -3'
miRNA:   3'- -CCGCGGCg---CGUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 2773 0.67 0.840572
Target:  5'- cGGCGgCG-GCGGAGCucaGCAGGCGc- -3'
miRNA:   3'- -CCGCgGCgCGUCUUGug-UGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 2881 0.7 0.701097
Target:  5'- cGGC-CaCGCGCAGGucccCGCGCAGGCGc- -3'
miRNA:   3'- -CCGcG-GCGCGUCUu---GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 2937 0.76 0.381455
Target:  5'- cGCaGCuCGCGCAGccaGGCGCGCAGGCGGGg -3'
miRNA:   3'- cCG-CG-GCGCGUC---UUGUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 3258 0.66 0.88596
Target:  5'- cGGCGCCGUagccgGCGGGcaccGCGCGCucgucggccGGCGAc -3'
miRNA:   3'- -CCGCGGCG-----CGUCU----UGUGUGu--------CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 3410 0.7 0.705125
Target:  5'- aGCGCCGCGUucucgcgcgccagcaGGGGCGCGUAGGCGc- -3'
miRNA:   3'- cCGCGGCGCG---------------UCUUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 3752 0.68 0.815214
Target:  5'- uGCGCCGCGUcgcccagcucGGGcgccCACACGGGCGc- -3'
miRNA:   3'- cCGCGGCGCG----------UCUu---GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 4037 0.71 0.64911
Target:  5'- cGGCcaccGCCGCGCGGGcccggcgGCGCucCAGGCGGc -3'
miRNA:   3'- -CCG----CGGCGCGUCU-------UGUGu-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 4134 0.69 0.740863
Target:  5'- gGGCGCCGCcccCGGGGCccuCGCGGGCa-- -3'
miRNA:   3'- -CCGCGGCGc--GUCUUGu--GUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 4214 0.7 0.660392
Target:  5'- cGGCGCUG-GCGGGG-GCGCGGGCGGc -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 4358 0.73 0.508496
Target:  5'- aGCGCCgGCGgGGGGCGCGCcGGCGGc -3'
miRNA:   3'- cCGCGG-CGCgUCUUGUGUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 8886 0.75 0.389815
Target:  5'- gGGCGCUG-GCGGAGgGCGgAGGCGAAg -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGUgUCUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.