miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 42214 0.66 0.88596
Target:  5'- aGCGCCGCGgguCGGcgUGCGCGgcGACGAAc -3'
miRNA:   3'- cCGCGGCGC---GUCuuGUGUGU--CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 82366 0.66 0.88596
Target:  5'- -cCGCCGCGCGGA-CGCGCAucCGc- -3'
miRNA:   3'- ccGCGGCGCGUCUuGUGUGUcuGCuu -5'
5108 5' -56.2 NC_001798.1 + 89677 0.66 0.88596
Target:  5'- cGCGCUGCGCGGGcC-CGgAGGCGu- -3'
miRNA:   3'- cCGCGGCGCGUCUuGuGUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 142114 0.66 0.88596
Target:  5'- gGGCGUCGCuaAcGAGCGCGCugccGGACGc- -3'
miRNA:   3'- -CCGCGGCGcgU-CUUGUGUG----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 28796 0.66 0.88596
Target:  5'- cGGCGgCGCGCGGGuccuccgccGC-CGCGGGCc-- -3'
miRNA:   3'- -CCGCgGCGCGUCU---------UGuGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 68114 0.66 0.88596
Target:  5'- cGGgGCCGCGCAcGGC-CA-AGACGGc -3'
miRNA:   3'- -CCgCGGCGCGUcUUGuGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 44210 0.66 0.885268
Target:  5'- uGGUgagGCCGCGCugccccaGGGACAUGCGcccGACGAc -3'
miRNA:   3'- -CCG---CGGCGCG-------UCUUGUGUGU---CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 43972 0.66 0.883875
Target:  5'- gGGCGUgggucgugggggauUGCGUAGGuCGCGCAGAUGu- -3'
miRNA:   3'- -CCGCG--------------GCGCGUCUuGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 139712 0.66 0.88177
Target:  5'- gGGCGCCaccgaaucgcgGCGCAGAACAuguacguuaagcucuCGgGGGCGu- -3'
miRNA:   3'- -CCGCGG-----------CGCGUCUUGU---------------GUgUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 31762 0.66 0.878931
Target:  5'- uGgGCCGgGCAGGcgcgaccgacGCGCGCGGGuCGGGa -3'
miRNA:   3'- cCgCGGCgCGUCU----------UGUGUGUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 13243 0.66 0.878931
Target:  5'- cGGgGCUGCGUucGGAugGgGCAGACc-- -3'
miRNA:   3'- -CCgCGGCGCG--UCUugUgUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 34590 0.66 0.878931
Target:  5'- cGGCGCgGCGUcucgguGGGACGCGggcaaaGGGCGGc -3'
miRNA:   3'- -CCGCGgCGCG------UCUUGUGUg-----UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 83530 0.66 0.878931
Target:  5'- aGC-CCGCGCAugccGAGCGCcCGGACGu- -3'
miRNA:   3'- cCGcGGCGCGU----CUUGUGuGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 111555 0.66 0.878931
Target:  5'- cGGuCGCCgGCGUAGAACACccaccACAGcucccugaGCGGGg -3'
miRNA:   3'- -CC-GCGG-CGCGUCUUGUG-----UGUC--------UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 150096 0.66 0.878931
Target:  5'- gGGCGa-GCGCGGGGCG-GCGGAgGAAg -3'
miRNA:   3'- -CCGCggCGCGUCUUGUgUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 88833 0.66 0.878931
Target:  5'- cGCGUCGCGaGGAGCAucuCGCGGcCGAu -3'
miRNA:   3'- cCGCGGCGCgUCUUGU---GUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 60976 0.66 0.876779
Target:  5'- aGGCGCgGCcguuugugucgcagGCGGAGgGgGCGGAUGAc -3'
miRNA:   3'- -CCGCGgCG--------------CGUCUUgUgUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 117577 0.66 0.871681
Target:  5'- cGCGCCG-GCAuGGAC-CACGGGCa-- -3'
miRNA:   3'- cCGCGGCgCGU-CUUGuGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 85987 0.66 0.871681
Target:  5'- aGGcCGCCGC-CGGGGCgcugGCGCAGGgGGGu -3'
miRNA:   3'- -CC-GCGGCGcGUCUUG----UGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 30829 0.66 0.869463
Target:  5'- cGGCcCCGCGCucccugucgcugggGGGACACACGGuccGCGc- -3'
miRNA:   3'- -CCGcGGCGCG--------------UCUUGUGUGUC---UGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.