miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 97713 0.67 0.840572
Target:  5'- gGGCGCUGCGUgcgcGAGCAgCGCGGGgagcuCGAGa -3'
miRNA:   3'- -CCGCGGCGCGu---CUUGU-GUGUCU-----GCUU- -5'
5108 5' -56.2 NC_001798.1 + 146832 0.67 0.840572
Target:  5'- gGGCGCgGCaGCAacGAACGCAgGGGCc-- -3'
miRNA:   3'- -CCGCGgCG-CGU--CUUGUGUgUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 24695 0.67 0.8323
Target:  5'- cGGCccGCCGCGCccccgcgcccGGGGCcCGCGGGCGc- -3'
miRNA:   3'- -CCG--CGGCGCG----------UCUUGuGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 30772 0.67 0.8323
Target:  5'- aGGCgGCCGUGCGGGccgGCACgGCcGugGAc -3'
miRNA:   3'- -CCG-CGGCGCGUCU---UGUG-UGuCugCUu -5'
5108 5' -56.2 NC_001798.1 + 153059 0.67 0.8323
Target:  5'- cGGCGCCGCcCccuGGGGCGgGCGGAgCGGc -3'
miRNA:   3'- -CCGCGGCGcG---UCUUGUgUGUCU-GCUu -5'
5108 5' -56.2 NC_001798.1 + 29819 0.67 0.8323
Target:  5'- cGGcCGCCGCgGCAGAcccccgGCACGgugagaGGGCGAc -3'
miRNA:   3'- -CC-GCGGCG-CGUCU------UGUGUg-----UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 71413 0.67 0.8323
Target:  5'- gGGUGcCCGCGCGGAcgccccccgGC-CACGGGCu-- -3'
miRNA:   3'- -CCGC-GGCGCGUCU---------UGuGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 115141 0.67 0.831463
Target:  5'- cGCGCgugCGCGCGGAucuggugGC-CAUAGGCGAc -3'
miRNA:   3'- cCGCG---GCGCGUCU-------UGuGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 58991 0.67 0.823845
Target:  5'- gGGCGaaCGCGgGGGGgGCGCGGAgGAAc -3'
miRNA:   3'- -CCGCg-GCGCgUCUUgUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 28669 0.67 0.823845
Target:  5'- cGGCGCCGCGUGGcGGCgGCcgAGGCGGu -3'
miRNA:   3'- -CCGCGGCGCGUC-UUG-UGugUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 113642 0.67 0.823845
Target:  5'- cGGCGCCGCcauGUGGGugGCGgcGGCGGAc -3'
miRNA:   3'- -CCGCGGCG---CGUCUugUGUguCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 126032 0.67 0.823845
Target:  5'- cGCGCUuagcgaGCGCcuGGACGCGgCGGACGAu -3'
miRNA:   3'- cCGCGG------CGCGu-CUUGUGU-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 79501 0.67 0.82299
Target:  5'- uGCGCCGC-CGGGgcgaggcguaucuGCGCGCcGGCGGAg -3'
miRNA:   3'- cCGCGGCGcGUCU-------------UGUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 42520 0.68 0.816085
Target:  5'- cGCGCagcccgaucuugucgGCGCAgGAACACAC-GACGGAg -3'
miRNA:   3'- cCGCGg--------------CGCGU-CUUGUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 3752 0.68 0.815214
Target:  5'- uGCGCCGCGUcgcccagcucGGGcgccCACACGGGCGc- -3'
miRNA:   3'- cCGCGGCGCG----------UCUu---GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 982 0.68 0.815214
Target:  5'- cGGCcaucGCCGCGUcuucuuaaAG-GCGCACAGACGc- -3'
miRNA:   3'- -CCG----CGGCGCG--------UCuUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 31347 0.68 0.815214
Target:  5'- gGGCG-CGCGCAG-GCGCGgcgggUGGGCGAAg -3'
miRNA:   3'- -CCGCgGCGCGUCuUGUGU-----GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 90682 0.68 0.815214
Target:  5'- cGGCGaCuCGCGCAGGGCcgccGC-CAGGCGc- -3'
miRNA:   3'- -CCGC-G-GCGCGUCUUG----UGuGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 24460 0.68 0.806416
Target:  5'- cGGCGCCGCGgGGGugcucgccGCcCugGGGCGc- -3'
miRNA:   3'- -CCGCGGCGCgUCU--------UGuGugUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 2716 0.68 0.806416
Target:  5'- cGGUGUCGgccaGCAGGGgGCGCAGGCu-- -3'
miRNA:   3'- -CCGCGGCg---CGUCUUgUGUGUCUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.