miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 144688 0.98 0.00653
Target:  5'- uCGCCCGACGCAGCGGCGAGUGC-UGAg -3'
miRNA:   3'- -GCGGGCUGCGUCGCCGCUCACGcACU- -5'
5109 3' -61.2 NC_001798.1 + 31140 0.76 0.199702
Target:  5'- gCGcCCCGGCGCGGgGGCGgcGGUGCGgGGg -3'
miRNA:   3'- -GC-GGGCUGCGUCgCCGC--UCACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 38795 0.76 0.214441
Target:  5'- gCGCUCGACGCGGuUGGCGAG-GCGg-- -3'
miRNA:   3'- -GCGGGCUGCGUC-GCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 12699 0.75 0.230105
Target:  5'- gGCCCGGguUGCugggGGCGGCGGGgGCGUGGu -3'
miRNA:   3'- gCGGGCU--GCG----UCGCCGCUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 12024 0.74 0.257164
Target:  5'- aCGCCaCGGCGgGGCGGCGGGggcaugcggucaGUGUGAc -3'
miRNA:   3'- -GCGG-GCUGCgUCGCCGCUCa-----------CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 28671 0.74 0.270412
Target:  5'- gCGCCgCGugGCGGCGGCcGAG-GCGg-- -3'
miRNA:   3'- -GCGG-GCugCGUCGCCG-CUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 77697 0.73 0.323214
Target:  5'- gCGCCCGGgGCAGCaGCGAGcGC-UGGg -3'
miRNA:   3'- -GCGGGCUgCGUCGcCGCUCaCGcACU- -5'
5109 3' -61.2 NC_001798.1 + 116343 0.73 0.33033
Target:  5'- aGCCCGucuACGCGGCGGCGuGcaaCGUGGc -3'
miRNA:   3'- gCGGGC---UGCGUCGCCGCuCac-GCACU- -5'
5109 3' -61.2 NC_001798.1 + 35407 0.72 0.3684
Target:  5'- cCGCCgGAUGCccgcgggggccuaauGCGGCGGGagGCGUGGg -3'
miRNA:   3'- -GCGGgCUGCGu--------------CGCCGCUCa-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 15332 0.72 0.382536
Target:  5'- gGcCCCGGCGCGGUagcggggGGCGAG-GCGgUGAg -3'
miRNA:   3'- gC-GGGCUGCGUCG-------CCGCUCaCGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 1623 0.71 0.433042
Target:  5'- gGCCCcgcggcagaGGCGCAGCGGCG-GcGCGUcGGg -3'
miRNA:   3'- gCGGG---------CUGCGUCGCCGCuCaCGCA-CU- -5'
5109 3' -61.2 NC_001798.1 + 118608 0.7 0.440818
Target:  5'- gCGcCCCGAUGCcGCGGCGcugcagcGGUGCGa-- -3'
miRNA:   3'- -GC-GGGCUGCGuCGCCGC-------UCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 2333 0.7 0.441687
Target:  5'- gCGCCaCGGCGCGGgGaagaGCGGGUGgucCGUGAg -3'
miRNA:   3'- -GCGG-GCUGCGUCgC----CGCUCAC---GCACU- -5'
5109 3' -61.2 NC_001798.1 + 24191 0.7 0.450428
Target:  5'- gGCCUGGCGCAcGUGGCGGccGcCGUGGc -3'
miRNA:   3'- gCGGGCUGCGU-CGCCGCUcaC-GCACU- -5'
5109 3' -61.2 NC_001798.1 + 36416 0.7 0.450428
Target:  5'- uGCCgGGCGgGGCGGUGGG-GCGg-- -3'
miRNA:   3'- gCGGgCUGCgUCGCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 153033 0.7 0.459264
Target:  5'- gGCCCG-CGCGGCGGCGc--GCGg-- -3'
miRNA:   3'- gCGGGCuGCGUCGCCGCucaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 101813 0.7 0.476301
Target:  5'- gCGCCuCGGguugggguaagcuCGCGGCGGgGGGagGCGUGGg -3'
miRNA:   3'- -GCGG-GCU-------------GCGUCGCCgCUCa-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 153064 0.7 0.477206
Target:  5'- cCGCCCccuggggcgGGCGgAGCGGCGGG-GCGg-- -3'
miRNA:   3'- -GCGGG---------CUGCgUCGCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 2209 0.7 0.486306
Target:  5'- cCGCgCGGCGCAGCGGgccCGAG-GCGc-- -3'
miRNA:   3'- -GCGgGCUGCGUCGCC---GCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 36141 0.7 0.486306
Target:  5'- cCGCCgguggGGCGCGGCGGCGGucgGgGUGGg -3'
miRNA:   3'- -GCGGg----CUGCGUCGCCGCUca-CgCACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.