miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 1424 0.67 0.630083
Target:  5'- gGCCCcagcgcgcgcaGGCGCGGU-GCGAGUGCGc-- -3'
miRNA:   3'- gCGGG-----------CUGCGUCGcCGCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 1504 0.66 0.66933
Target:  5'- gCGCCCGAgGCGGCGGCccg-GcCGUc- -3'
miRNA:   3'- -GCGGGCUgCGUCGCCGcucaC-GCAcu -5'
5109 3' -61.2 NC_001798.1 + 1623 0.71 0.433042
Target:  5'- gGCCCcgcggcagaGGCGCAGCGGCG-GcGCGUcGGg -3'
miRNA:   3'- gCGGG---------CUGCGUCGCCGCuCaCGCA-CU- -5'
5109 3' -61.2 NC_001798.1 + 2136 0.69 0.494567
Target:  5'- uCGCCCG--GCAGCGGCGAGUagaggaucaccacGCGc-- -3'
miRNA:   3'- -GCGGGCugCGUCGCCGCUCA-------------CGCacu -5'
5109 3' -61.2 NC_001798.1 + 2209 0.7 0.486306
Target:  5'- cCGCgCGGCGCAGCGGgccCGAG-GCGc-- -3'
miRNA:   3'- -GCGgGCUGCGUCGCC---GCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 2333 0.7 0.441687
Target:  5'- gCGCCaCGGCGCGGgGaagaGCGGGUGgucCGUGAg -3'
miRNA:   3'- -GCGG-GCUGCGUCgC----CGCUCAC---GCACU- -5'
5109 3' -61.2 NC_001798.1 + 2665 0.66 0.717699
Target:  5'- gCGCCucccgCGGCGCGGaGGCGGGcGCGg-- -3'
miRNA:   3'- -GCGG-----GCUGCGUCgCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 2940 0.66 0.727203
Target:  5'- aGCUCG-CGCAGCcaggcgcgcaGGCGGGgcgcgucgGCGUGc -3'
miRNA:   3'- gCGGGCuGCGUCG----------CCGCUCa-------CGCACu -5'
5109 3' -61.2 NC_001798.1 + 3200 0.7 0.486306
Target:  5'- cCGgCCGGCGCGGaGGCGGGcGCGg-- -3'
miRNA:   3'- -GCgGGCUGCGUCgCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 4372 0.67 0.620257
Target:  5'- gCGCgCCGGCgGCGGUGGUG-GUG-GUGGu -3'
miRNA:   3'- -GCG-GGCUG-CGUCGCCGCuCACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 5385 0.68 0.571381
Target:  5'- gCGUCCGugGCGGCGGCccguuGGUcGCGc-- -3'
miRNA:   3'- -GCGGGCugCGUCGCCGc----UCA-CGCacu -5'
5109 3' -61.2 NC_001798.1 + 12024 0.74 0.257164
Target:  5'- aCGCCaCGGCGgGGCGGCGGGggcaugcggucaGUGUGAc -3'
miRNA:   3'- -GCGG-GCUGCgUCGCCGCUCa-----------CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 12699 0.75 0.230105
Target:  5'- gGCCCGGguUGCugggGGCGGCGGGgGCGUGGu -3'
miRNA:   3'- gCGGGCU--GCG----UCGCCGCUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 14299 0.69 0.504748
Target:  5'- aGCCCccggaacgGAUG-AGUGGgGGGUGCGUGGg -3'
miRNA:   3'- gCGGG--------CUGCgUCGCCgCUCACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 14986 0.67 0.659541
Target:  5'- aGCuuGgGCGgGGgGGCGAG-GCGUGu -3'
miRNA:   3'- gCGggC-UGCgUCgCCGCUCaCGCACu -5'
5109 3' -61.2 NC_001798.1 + 15059 0.66 0.679091
Target:  5'- gGCCCGGgGCGcGCGGgGGGUG-GUu- -3'
miRNA:   3'- gCGGGCUgCGU-CGCCgCUCACgCAcu -5'
5109 3' -61.2 NC_001798.1 + 15332 0.72 0.382536
Target:  5'- gGcCCCGGCGCGGUagcggggGGCGAG-GCGgUGAg -3'
miRNA:   3'- gC-GGGCUGCGUCG-------CCGCUCaCGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 15440 0.66 0.688816
Target:  5'- gGCCCcggaguCGUggGGCGGgGGGUcGCGUGGg -3'
miRNA:   3'- gCGGGcu----GCG--UCGCCgCUCA-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 15568 0.66 0.679091
Target:  5'- uGCcgCCGcCGCGGCGGgGAGUGgCGa-- -3'
miRNA:   3'- gCG--GGCuGCGUCGCCgCUCAC-GCacu -5'
5109 3' -61.2 NC_001798.1 + 17121 0.66 0.679091
Target:  5'- cCGCCCG-CG-AGCGGU-AGUGCGcggUGAg -3'
miRNA:   3'- -GCGGGCuGCgUCGCCGcUCACGC---ACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.