miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 144722 1.07 0.003232
Target:  5'- aGUUUACACACCCGGCCCUGACGGGUGc -3'
miRNA:   3'- -CAAAUGUGUGGGCCGGGACUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 28611 0.8 0.221537
Target:  5'- ---cGCGCGCCUGGCCC-GACGGGg- -3'
miRNA:   3'- caaaUGUGUGGGCCGGGaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 33535 0.77 0.294728
Target:  5'- --aUGCACGCCCucuGCCCccgggGACGGGUGg -3'
miRNA:   3'- caaAUGUGUGGGc--CGGGa----CUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 122406 0.76 0.345496
Target:  5'- ---aGCugGCCaCGGCCCUGACGGa-- -3'
miRNA:   3'- caaaUGugUGG-GCCGGGACUGCCcac -5'
5109 5' -56.7 NC_001798.1 + 95512 0.75 0.385433
Target:  5'- aGUUUAC-CACCCGcGCCCUGgagcGCGGGc- -3'
miRNA:   3'- -CAAAUGuGUGGGC-CGGGAC----UGCCCac -5'
5109 5' -56.7 NC_001798.1 + 27775 0.73 0.521736
Target:  5'- --cUGCGCACgCCaGCCggGACGGGUGa -3'
miRNA:   3'- caaAUGUGUG-GGcCGGgaCUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 4104 0.73 0.521736
Target:  5'- ---gGCGgGCUCGGCCCUGgGCGGGc- -3'
miRNA:   3'- caaaUGUgUGGGCCGGGAC-UGCCCac -5'
5109 5' -56.7 NC_001798.1 + 110544 0.73 0.531541
Target:  5'- -gUUAUgauUACCgCGGCCCUGGCGGGc- -3'
miRNA:   3'- caAAUGu--GUGG-GCCGGGACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 150285 0.71 0.642422
Target:  5'- ---cGCGCcuGCCCGGCCCaGACucugugcuuGGGUGu -3'
miRNA:   3'- caaaUGUG--UGGGCCGGGaCUG---------CCCAC- -5'
5109 5' -56.7 NC_001798.1 + 80537 0.7 0.652601
Target:  5'- ---cAgACGCUCGGCCC-GGCGGGg- -3'
miRNA:   3'- caaaUgUGUGGGCCGGGaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 141192 0.7 0.662765
Target:  5'- uUUUAaGCACCUgGGCCCgcggGACGGGg- -3'
miRNA:   3'- cAAAUgUGUGGG-CCGGGa---CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 93132 0.7 0.672904
Target:  5'- gGUUUGagcaGCGCCUGGCCUcggugaUGGCGGGc- -3'
miRNA:   3'- -CAAAUg---UGUGGGCCGGG------ACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 10869 0.7 0.683011
Target:  5'- ---aACACcaACCCGGCCCcgcgagccaUGuuCGGGUGg -3'
miRNA:   3'- caaaUGUG--UGGGCCGGG---------ACu-GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 70567 0.7 0.683011
Target:  5'- --cUGCGCACCacggCGGCCCUGGgGccGGUGc -3'
miRNA:   3'- caaAUGUGUGG----GCCGGGACUgC--CCAC- -5'
5109 5' -56.7 NC_001798.1 + 51558 0.7 0.693075
Target:  5'- -----uGCGCUCGGCCCUGGCccuGGGa- -3'
miRNA:   3'- caaaugUGUGGGCCGGGACUG---CCCac -5'
5109 5' -56.7 NC_001798.1 + 54001 0.7 0.70309
Target:  5'- ---gACGCGCCUGGCCCaccUGugGGa-- -3'
miRNA:   3'- caaaUGUGUGGGCCGGG---ACugCCcac -5'
5109 5' -56.7 NC_001798.1 + 81528 0.7 0.70309
Target:  5'- --gUACGCACCgCGGCCCau-CGGGc- -3'
miRNA:   3'- caaAUGUGUGG-GCCGGGacuGCCCac -5'
5109 5' -56.7 NC_001798.1 + 144422 0.69 0.713045
Target:  5'- ---gACGCuggacagccgACCCGGCCgCUaGACGGGUc -3'
miRNA:   3'- caaaUGUG----------UGGGCCGG-GA-CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 59453 0.69 0.722932
Target:  5'- ---aACGCACCCcgcguGCCCgGGCGcGGUGa -3'
miRNA:   3'- caaaUGUGUGGGc----CGGGaCUGC-CCAC- -5'
5109 5' -56.7 NC_001798.1 + 129350 0.69 0.722932
Target:  5'- ---aGCGCcCgCCGGgCCUGGCGGGg- -3'
miRNA:   3'- caaaUGUGuG-GGCCgGGACUGCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.